Pre_GI: BLASTN Hits

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Query: NC_008261:967973 Clostridium perfringens ATCC 13124, complete genome

Start: 967973, End: 988635, Length: 20663

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003366:10137731013773103624122469Clostridium perfringens str. 13, complete genome07004BLASTN svgBLASTP svg
NC_010723:13792561379256140062221367Clostridium botulinum E3 str. Alaska E43, complete genome01152BLASTN svgBLASTP svg
NC_018528:1681060*1681060170729126232Lactobacillus helveticus R0052 chromosome, complete genome5e-20107BLASTN svgBLASTP svg
NC_015975:1936504*1936504196101924516Lactobacillus ruminis ATCC 27782 chromosome, complete genome2e-19105BLASTN svgBLASTP svg
NC_006814:403723*40372344563241910Lactobacillus acidophilus NCFM, complete genome3e-18101BLASTN svgBLASTP svg
NC_005362:1870620*1870620189402323404Lactobacillus johnsonii NCC 533, complete genome3e-18101BLASTN svgBLASTP svg
NC_014106:419511*41951145680837298Lactobacillus crispatus ST1, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_008530:1775841*1775841179784122001Lactobacillus gasseri ATCC 33323, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_015602:1339067*1339067136576626700Lactobacillus kefiranofaciens ZW3 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_020291:552104*55210457702024917Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome7e-1383.8BLASTN svgBLASTP svg
NC_015214:437733*43773348259944867Lactobacillus acidophilus 30SC chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_014724:439594*43959448564446051Lactobacillus amylovorus GRL 1112 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_014150:10995071099507112317623670Brachyspira murdochii DSM 12563 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015687:95918*9591811738721470Clostridium acetobutylicum DSM 1731 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_003030:95918*9591811738721470Clostridium acetobutylicum ATCC 824, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_013192:469771*46977149651726747Leptotrichia buccalis DSM 1135, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013171:228356*22835625488926534Anaerococcus prevotii DSM 20548, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014376:2964731*2964731300604241312Clostridium saccharolyticum WM1 chromosome, complete genome1e-0560BLASTN svgBLASTP svg