Pre_GI: BLASTN Hits

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Query: NC_008150:1147883 Yersinia pestis Antiqua, complete genome

Start: 1147883, End: 1166877, Length: 18995

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from the Republic of Congo. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008149:30229703022970304559922630Yersinia pestis Nepal516, complete genome016640BLASTN svgBLASTP svg
NC_004088:31869543186954320951322560Yersinia pestis KIM, complete genome016640BLASTN svgBLASTP svg
NC_003143:14412111441211146223121021Yersinia pestis CO92, complete genome016640BLASTN svgBLASTP svg
NC_005810:14133051413305143757924275Yersinia pestis biovar Microtus str. 91001, complete genome016630BLASTN svgBLASTP svg
NC_006155:15673061567306159029622991Yersinia pseudotuberculosis IP 32953, complete genome016290BLASTN svgBLASTP svg
NC_010634:15657881565788158879323006Yersinia pseudotuberculosis PB1/+, complete genome016260BLASTN svgBLASTP svg
NC_010465:30469043046904306991523012Yersinia pseudotuberculosis YPIII, complete genome016190BLASTN svgBLASTP svg
NC_010159:15580001558000157786119862Yersinia pestis Angola, complete genome011490BLASTN svgBLASTP svg
NC_014121:35538093553809358001526207Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete6e-50206BLASTN svgBLASTP svg
NC_015224:88953688953690956920034Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,9e-0660BLASTN svgBLASTP svg