Pre_GI: BLASTN Hits

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Query: NC_004347:4007847 Shewanella oneidensis MR-1, complete genome

Start: 4007847, End: 4035099, Length: 27253

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008321:3815940*3815940385514239203Shewanella sp. MR-4, complete genome05374BLASTN svgBLASTP svg
NC_004347:3670145*3670145369364023496Shewanella oneidensis MR-1, complete genome02565BLASTN svgBLASTP svg
NC_004347:1038253*1038253107053732285Shewanella oneidensis MR-1, complete genome02464BLASTN svgBLASTP svg
NC_004347:44411104441110446506923960Shewanella oneidensis MR-1, complete genome02234BLASTN svgBLASTP svg
NC_007954:2440000*2440000246325523256Shewanella denitrificans OS217, complete genome0767BLASTN svgBLASTP svg
NC_009052:4168776*4168776418945120676Shewanella baltica OS155, complete genome3e-139504BLASTN svgBLASTP svg
NC_008573:19531719531724745052134Shewanella sp. ANA-3 plasmid 1, complete sequence1e-51212BLASTN svgBLASTP svg
NC_008322:2077628*2077628211677239145Shewanella sp. MR-7, complete genome3e-40174BLASTN svgBLASTP svg
NC_004349:393839382609922162Shewanella oneidensis MR-1 plasmid pMR-1, complete sequence2e-35159BLASTN svgBLASTP svg
NC_012880:2871480*2871480289700125522Dickeya dadantii Ech703, complete genome7e-35157BLASTN svgBLASTP svg
NC_012880:31252613125261315478529525Dickeya dadantii Ech703, complete genome7e-35157BLASTN svgBLASTP svg
NC_012779:610509*61050963687526367Edwardsiella ictaluri 93-146, complete genome3e-34155BLASTN svgBLASTP svg
NC_010334:15616911561691159069529005Shewanella halifaxensis HAW-EB4, complete genome1e-30143BLASTN svgBLASTP svg
NC_020063:3690308*3690308375363663329Enterobacteriaceae bacterium strain FGI 57, complete genome2e-29139BLASTN svgBLASTP svg
NC_005139:178400017840001927839143840Vibrio vulnificus YJ016 chromosome I, complete sequence7e-29137BLASTN svgBLASTP svg
NC_009997:51882215188221522795839738Shewanella baltica OS195, complete genome2e-23119BLASTN svgBLASTP svg
NC_012779:261438*26143828632424887Edwardsiella ictaluri 93-146, complete genome2e-20109BLASTN svgBLASTP svg
NC_008322:46110004611000462903818039Shewanella sp. MR-7, complete genome4e-18101BLASTN svgBLASTP svg
NC_009788:16360163603711520756Escherichia coli E24377A plasmid pETEC_73, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_014228:22700002270000231663046631Xenorhabdus nematophila ATCC 19061, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_014228:4408500*4408500443149923000Xenorhabdus nematophila ATCC 19061, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_008700:672326*67232669663424309Shewanella amazonensis SB2B, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013716:33278813327881336492937049Citrobacter rodentium ICC168, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_015224:4386599*4386599441050923911Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,1e-1179.8BLASTN svgBLASTP svg
NC_015224:27019142701914272426222349Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,1e-1179.8BLASTN svgBLASTP svg
NC_015224:2095816*2095816211873722922Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,1e-1179.8BLASTN svgBLASTP svg
NC_008309:555680*55568057929723618Haemophilus somnus 129PT, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_014541:14146271414627144361328987Ferrimonas balearica DSM 9799 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010334:20909902090990211409923110Shewanella halifaxensis HAW-EB4, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015224:61080761080762877617970Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,1e-0869.9BLASTN svgBLASTP svg
NC_014800:32986132986135277422914Pseudoalteromonas sp. SM9913 chromosome chromosome II, complete5e-0867.9BLASTN svgBLASTP svg
NC_014170:57954579548259924646Xenorhabdus nematophila ATCC 19061 plasmid XNC1_p, complete5e-0867.9BLASTN svgBLASTP svg
NC_011138:31816831816833664718480Alteromonas macleodii 'Deep ecotype', complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015581:771482*77148280463933158Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_015224:27903727903730366824632Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,8e-0763.9BLASTN svgBLASTP svg
NC_013722:1905655*1905655193296127307Xanthomonas albilineans, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_012779:20645822064582209112726546Edwardsiella ictaluri 93-146, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_010725:3917369*3917369396168844320Methylobacterium populi BJ001, complete genome3e-0661.9BLASTN svgBLASTP svg