Query: NC_003305:1 Agrobacterium tumefaciens str. C58 chromosome linear, complete
Start: 1, End: 20330, Length: 20330
Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria
General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_003063:2059311 | 2059311 | 2088999 | 29689 | Agrobacterium tumefaciens str. C58 chromosome linear, complete | 0 | 20390 | BLASTN svg | BLASTP svg |
NC_008686:1180388* | 1180388 | 1206599 | 26212 | Paracoccus denitrificans PD1222 chromosome 1, complete sequence | 2e-50 | 208 | BLASTN svg | BLASTP svg |
NC_015976:1064888 | 1064888 | 1092852 | 27965 | Sphingobium sp. SYK-6, complete genome | 2e-31 | 145 | BLASTN svg | BLASTP svg |
NC_002678:5714000 | 5714000 | 5736844 | 22845 | Mesorhizobium loti MAFF303099, complete genome | 7e-22 | 113 | BLASTN svg | BLASTP svg |
NC_002678:4859111 | 4859111 | 4883496 | 24386 | Mesorhizobium loti MAFF303099, complete genome | 7e-22 | 113 | BLASTN svg | BLASTP svg |
NC_003911:253400* | 253400 | 279137 | 25738 | Silicibacter pomeroyi DSS-3, complete genome | 1e-20 | 109 | BLASTN svg | BLASTP svg |
NC_015675:2567000* | 2567000 | 2589888 | 22889 | Mesorhizobium opportunistum WSM2075 chromosome, complete genome | 2e-19 | 105 | BLASTN svg | BLASTP svg |
NC_014923:2439197* | 2439197 | 2462726 | 23530 | Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete | 7e-19 | 103 | BLASTN svg | BLASTP svg |
NC_019973:2417000* | 2417000 | 2439599 | 22600 | Mesorhizobium australicum WSM2073, complete genome | 7e-19 | 103 | BLASTN svg | BLASTP svg |
NC_010524:933191 | 933191 | 957638 | 24448 | Leptothrix cholodnii SP-6, complete genome | 1e-17 | 99.6 | BLASTN svg | BLASTP svg |
NC_014363:1680578 | 1680578 | 1707382 | 26805 | Olsenella uli DSM 7084 chromosome, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_007492:2994036 | 2994036 | 3023113 | 29078 | Pseudomonas fluorescens PfO-1, complete genome | 4e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_007760:4751000 | 4751000 | 4770564 | 19565 | Anaeromyxobacter dehalogenans 2CP-C, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_014323:3895376 | 3895376 | 3915228 | 19853 | Herbaspirillum seropedicae SmR1 chromosome, complete genome | 4e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_008043:499399* | 499399 | 523041 | 23643 | Silicibacter sp. TM1040 mega plasmid, complete sequence | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_013510:517878* | 517878 | 562514 | 44637 | Thermomonospora curvata DSM 43183, complete genome | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_008027:2051821* | 2051821 | 2073338 | 21518 | Pseudomonas entomophila L48, complete genome | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_005810:4045303 | 4045303 | 4068202 | 22900 | Yersinia pestis biovar Microtus str. 91001, complete genome | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_014165:2533040 | 2533040 | 2563805 | 30766 | Thermobispora bispora DSM 43833 chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_012724:1914740 | 1914740 | 1940495 | 25756 | Burkholderia glumae BGR1 chromosome 1, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_007005:5367454* | 5367454 | 5394263 | 26810 | Pseudomonas syringae pv. syringae B728a, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_011145:4797548 | 4797548 | 4819126 | 21579 | Anaeromyxobacter sp. K, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_014844:659829* | 659829 | 706185 | 46357 | Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_018750:4311300* | 4311300 | 4329146 | 17847 | Streptomyces venezuelae ATCC 10712, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_020260:3355814 | 3355814 | 3381531 | 25718 | Cronobacter sakazakii Sp291, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_020126:7661551* | 7661551 | 7684945 | 23395 | Myxococcus stipitatus DSM 14675, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_011894:5787990 | 5787990 | 5833599 | 45610 | Methylobacterium nodulans ORS 2060, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_007802:3575739* | 3575739 | 3624491 | 48753 | Jannaschia sp. CCS1, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |