Pre_GI: BLASTP Hits

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Query: NC_017378:1175639:1176337 Helicobacter pylori Puno120 chromosome, complete genome

Start: 1176337, End: 1177578, Length: 1242

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017379:1233482:1234183123418312354241242Helicobacter pylori Puno135 chromosome, complete genomephosphopentomutase0771
NC_014837:3633378:3660842366084236620651224Pantoea sp. At-9b chromosome, complete genomephosphopentomutase4e-129461
NC_013956:3641368:3672081367208136733401260Pantoea ananatis LMG 20103 chromosome, complete genomeDeoB2e-127455
NC_020260:3277007:3300554330055433017771224Cronobacter sakazakii Sp291, complete genomephosphopentomutase9e-124443
NC_014618:4010689:4035599403559940368221224Enterobacter cloacae SCF1 chromosome, complete genomephosphopentomutase9e-124443
NC_013716:5141269:5168865516886551700881224Citrobacter rodentium ICC168, complete genomephosphopentomutase3e-123441
NC_017259:523840:5528555528555540781224Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,phosphopentomutase2e-122439
NC_002942:675829:6771096771096783321224Legionella pneumophila subsp. pneumophila str. Philadelphia 1,phosphopentomutase1e-107390
NC_015696:610000:6176556176556188991245Francisella sp. TX077308 chromosome, complete genomephosphopentomutase8e-96350
NC_015425:718384:7243327243327255371206Clostridium botulinum BKT015925 chromosome, complete genomephosphopentomutase2e-78292
NC_013517:1916020:1927423192742319286011179Sebaldella termitidis ATCC 33386, complete genomephosphopentomutase1e-76287
NC_015555:1989463:2005001200500120061701170Thermoanaerobacterium xylanolyticum LX-11 chromosome, completePhosphopentomutase4e-74278
NC_020291:5093138:5108812510881251100021191Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomephosphopentomutase DeoB7e-74278
NC_015589:3085442:3103458310345831046391182Desulfotomaculum ruminis DSM 2154 chromosome, complete genomephosphopentomutase1e-73277
NC_014220:481923:5004355004355016101176Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomephosphopentomutase6e-73275
NC_019970:2263427:2276961227696122781301170Thermoanaerobacterium thermosaccharolyticum M0795, complete genomephosphopentomutase2e-71270
NC_009617:3647500:3657550365755036587401191Clostridium beijerinckii NCIMB 8052 chromosome, complete genomephosphopentomutase3e-71269
NC_018607:2375344:2375962237596223771221161Brachyspira pilosicoli B2904 chromosome, complete genomephosphopentomutase4e-71269
NC_014150:2617072:2617072261707226182291158Brachyspira murdochii DSM 12563 chromosome, complete genomephosphopentomutase7e-69261
NC_009454:1246393:1247396124739612485801185Pelotomaculum thermopropionicum SI, complete genomephosphopentomutase1e-68261
NC_019897:2004050:2024131202413120253091179Thermobacillus composti KWC4 chromosome, complete genomephosphopentomutase2e-67256
NC_011297:1296968:1298275129827512994531179Dictyoglomus thermophilum H-6-12, complete genomephosphopentomutase7e-65248
NC_010999:2483000:2487653248765324888431191Lactobacillus casei, complete genomePhosphopentomutase (Phosphodeoxyribomutase)2e-63243
NC_015433:1315363:1315719131571913169301212Streptococcus suis ST3 chromosome, complete genomephosphopentomutase9e-63241
NC_013199:2386924:2394724239472423959141191Lactobacillus rhamnosus Lc 705, complete genomePhosphopentomutase (Phosphodeoxyribomutase)4e-60232
NC_006322:717953:7288637288637300891227Bacillus licheniformis ATCC 14580, complete genomephosphopentomutase1e-1894.7
NC_006270:718169:7290807290807303061227Bacillus licheniformis ATCC 14580, complete genomephosphopentomutase1e-1894.7
NC_013198:394000:4285744285744298031230Lactobacillus rhamnosus GG, complete genomephosphopentomutase1e-1481.3