Pre_GI: BLASTP Hits

Some Help

Query: NC_017328:3935185:3952571 Shigella flexneri 2002017 chromosome, complete genome

Start: 3952571, End: 3954097, Length: 1527

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:4095016:4105292410529241068181527Shigella sonnei Ss046, complete genometransposition protein01007
NC_006512:2789098:2808892280889228104001509Idiomarina loihiensis L2TR, complete genomeTransposon Tn7 transposition protein tnsD8e-93341
NC_009052:5089963:5097427509742750989291503Shewanella baltica OS155, complete genometransposition protein1e-92340
NC_015851:89006:1025961025961041221527Acidithiobacillus caldus SM-1 megaplasmid, complete sequencetransposon Tn7 transposition protein TnsD6e-91335
NC_015572:4916430:4929675492967549311711497Methylomonas methanica MC09 chromosome, complete genometransposition protein1e-82307
NC_007645:7136956:7186875718687571884071533Hahella chejuensis KCTC 2396, complete genomeTn7-like transposition protein D4e-70265
NC_015497:4564339:4574669457466945762401572Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genometransposon Tn7 transposition protein TnsD2e-68260
NC_015740:4508375:4515166451516645166681503Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein3e-68259
NC_007498:3399478:3411850341185034133971548Pelobacter carbinolicus DSM 2380, complete genomehypothetical protein3e-56219
NC_010995:4525119:4545561454556145471231563Cellvibrio japonicus Ueda107, complete genomeTn7-Cj, transposition protein TnsD8e-56218
NC_011206:123791:1334731334731350741602Acidithiobacillus ferrooxidans ATCC 53993, complete genomehypothetical protein4e-39162
NC_015958:2174731:2180905218090521827911887Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeTn7-like transposition protein D1e-23111
NC_013921:1915377:1920550192055019224391890Thermoanaerobacter italicus Ab9 chromosome, complete genomeTn7-like transposition protein D2e-23110
NC_014394:1325616:1325616132561613273611746Gallionella capsiferriformans ES-2 chromosome, complete genomeTn5468, transposition protein D3e-23110
NC_014657:2127500:2132524213252421344011878Caldicellulosiruptor owensensis OL chromosome, complete genometn7-like transposition protein d4e-21103
NC_020050:1:2404924049253861338Cylindrospermum stagnale PCC 7417 plasmid pCYLST.01, partialhypothetical protein9e-2098.6
NC_010501:5735656:5747606574760657490751470Pseudomonas putida W619, complete genomehypothetical protein3e-1996.7
NC_010512:1015557:1043446104344610452211776Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencehypothetical protein9e-1685.5
NC_015733:5955467:5966986596698659684641479Pseudomonas putida S16 chromosome, complete genomehypothetical protein5e-1479.7
NC_007492:6372900:6411722641172264134311710Pseudomonas fluorescens PfO-1, complete genomehypothetical protein6e-1375.9
NC_010625:1602191:1620142162014216219951854Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencehypothetical protein9e-1375.5
NC_010625:1602191:1619001161900116200171017Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencehypothetical protein2e-1068.2
NC_004578:6334735:6342781634278163444721692Pseudomonas syringae pv. tomato str. DC3000, complete genometransposition protein, TnsD-related protein3e-1067
NC_002947:6152500:6166911616691161685091599Pseudomonas putida KT2440, complete genometransposition protein, TnsD-related protein1e-0965.1
NC_007974:138176:1611261611261624331308Ralstonia metallidurans CH34 chromosome 2, complete sequencehypothetical protein3e-0963.5
NC_013959:1059004:1072504107250410740061503Sideroxydans lithotrophicus ES-1 chromosome, complete genomehypothetical protein5e-0963.2
NC_016616:1091606:1126937112693711284181482Dechlorosoma suillum PS chromosome, complete genomehypothetical protein7e-0859.3
NC_007492:6372900:6409988640998864116731686Pseudomonas fluorescens PfO-1, complete genometransposition protein, TnsD-like protein9e-0755.5