Pre_GI: BLASTP Hits

Some Help

Query: NC_017328:385552:397836 Shigella flexneri 2002017 chromosome, complete genome

Start: 397836, End: 398195, Length: 360

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008258:401786:417622417622417981360Shigella flexneri 5 str. 8401, complete genomehypothetical protein4e-62236
NC_004337:367687:379972379972380283312Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-53206
NC_004741:366822:379105379105379416312Shigella flexneri 2a str. 2457T, complete genomehypothetical protein3e-53206
NC_004578:3817330:382945138294513829780330Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein7e-1165.9
NC_015963:117178:148439148439148708270Enterobacter asburiae LF7a plasmid pENTAS01, complete sequencehypothetical protein2e-0754.3
NC_008609:2518993:253486225348622535143282Pelobacter propionicus DSM 2379, complete genomeconserved hypothetical cytosolic protein1e-0651.6