Pre_GI: BLASTP Hits

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Query: NC_017328:335160:337426 Shigella flexneri 2002017 chromosome, complete genome

Start: 337426, End: 337881, Length: 456

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:1475521:147778714777871478242456Escherichia coli KO11FL chromosome, complete genomeputative head assembly protein4e-86315
CP002516:1475521:147778714777871478242456Escherichia coli KO11, complete genomeputative head assembly protein4e-86315
CP002185:2608000:262761526276152628070456Escherichia coli W, complete genomehypothetical protein4e-86315
CU928145:2655989:267867326786732679131459Escherichia coli 55989 chromosome, complete genomeHead assembly protein8e-86315
NC_011748:2655989:267867326786732679131459Escherichia coli 55989, complete genomeHead assembly protein8e-86315
NC_013364:2612822:262749226274922627947456Escherichia coli O111:H- str. 11128, complete genomeputative head assembly protein1e-85314
NC_009800:320115:321068321068321523456Escherichia coli HS, complete genomehypothetical protein1e-85314
NC_013361:3254000:327401732740173274472456Escherichia coli O26:H11 str. 11368 chromosome, complete genomehead assembly protein2e-85313
NC_007946:2593500:261048926104892610944456Escherichia coli UTI89, complete genomehead assembly protein4e-85312
NC_008563:2565876:258371525837152584170456Escherichia coli APEC O1, complete genomehead assembly protein4e-85312
NC_011742:2489000:250681225068122507267456Escherichia coli S88 chromosome, complete genomehead assembly protein4e-85312
NC_010067:2529750:256868825686882569143456Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-83308
NC_012125:1360593:136458813645881365043456Salmonella enterica subsp. enterica serovar Paratyphi C strainProtein gp142e-83307
NC_006905:401154:403214403214403669456Salmonella enterica subsp. enterica serovar Choleraesuis strVG14_BPP22 (Q01075) Protein gp142e-83307
NC_011205:645591:647714647714648169456Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-83306
NC_016860:397138:399721399721400176456Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-83305
NC_011083:403022:405187405187405600414Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein1e-73275