Pre_GI: BLASTP Hits

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Query: NC_017328:1075535:1095085 Shigella flexneri 2002017 chromosome, complete genome

Start: 1095085, End: 1095303, Length: 219

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
CP002797:4603787:463663246366324637288657Escherichia coli NA114, complete genomePutative transcriptional regulator, TetR family9e-34142
NC_013850:1753716:178398017839801784687708Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, TetR family1e-1582
NC_013422:1732677:174532717453271745968642Halothiobacillus neapolitanus c2, complete genometranscriptional regulator, TetR family1e-1168.6
NC_002939:805794:826391826391826981591Geobacter sulfurreducens PCA, complete genometranscriptional regulator, TetR family1e-1065.1
NC_007493:1:138391383914498660Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceregulatory protein TetR family5e-1063.2
NC_009049:80184:951149511495773660Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequencetranscriptional regulator, TetR family5e-1063.2
NC_012108:904260:918404918404919174771Desulfobacterium autotrophicum HRM2, complete genometranscriptional regulator (TetR family protein)2e-0858.2
NC_002947:2809591:282171928217192822312594Pseudomonas putida KT2440, complete genometranscriptional regulator, TetR family1e-0858.2
NC_006512:728281:746456746456747082627Idiomarina loihiensis L2TR, complete genomeTranscriptional regulator, TetR family6e-0856.2
NC_015675:6228000:622956562295656230176612Mesorhizobium opportunistum WSM2075 chromosome, complete genomeTetR family transcriptional regulator2e-0754.7
NC_010002:4256651:428231342823134282894582Delftia acidovorans SPH-1, complete genometranscriptional regulator, TetR family2e-0754.3
NC_015856:3059737:308118730811873081783597Collimonas fungivorans Ter331 chromosome, complete genomeTetR family transcriptional regulator2e-0754.3
NC_021150:1823874:182683718268371827376540Azotobacter vinelandii CA6, complete genometranscriptional regulator, TetR family3e-0753.9
NC_012560:1823861:182682418268241827363540Azotobacter vinelandii DJ, complete genometranscriptional regulator, TetR family3e-0753.9
NC_015410:1144272:116402411640241164626603Pseudomonas mendocina NK-01 chromosome, complete genomeTetR family transcriptional regulator4e-0753.5
NC_009439:1075170:109619310961931096795603Pseudomonas mendocina ymp, complete genomeTetR family transcriptional regulator4e-0753.5
NC_014831:1557485:157324815732481573841594Thermaerobacter marianensis DSM 12885 chromosome, complete genomeregulatory protein TetR6e-0752.8
NC_009659:1129066:114427111442711144846576Janthinobacterium sp. Marseille chromosome, complete genomeTetR family transcriptional regulator2e-0651.2
NC_016112:364723:377077377077377793717Methylomicrobium alcaliphilum chromosome, complete genometranscriptional regulator, TetR family3e-0650.8
NC_008596:3404832:343634934363493436951603Mycobacterium smegmatis str. MC2 155, complete genomeregulatory protein, TetR3e-0650.4
NC_015572:1974000:198222719822271982814588Methylomonas methanica MC09 chromosome, complete genomeTetR family transcriptional regulator6e-0649.7
NC_015557:765500:785162785162785776615Hydrogenobaculum sp. 3684 chromosome, complete genometranscriptional regulator, TetR family7e-0649.3
NC_015587:765500:785217785217785831615Hydrogenobaculum sp. SHO chromosome, complete genometranscriptional regulator, TetR family7e-0649.3
NC_020411:765500:785189785189785803615Hydrogenobaculum sp. HO, complete genometranscriptional regulator, TetR family7e-0649.3