Pre_GI: BLASTP Hits

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Query: NC_017328:1075535:1084079 Shigella flexneri 2002017 chromosome, complete genome

Start: 1084079, End: 1085461, Length: 1383

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011601:1114104:1121713112171311232421530Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein0759
NC_010498:2278306:2299911229991123014761566Escherichia coli SMS-3-5, complete genomehypothetical protein0695
NC_014618:690056:7014637014637029801518Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein5e-41169
NC_011274:311843:3280693280693295891521Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein5e-37155
NC_016831:2667561:2693002269300226943811380Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein3e-35149
NC_010102:2762304:2778305277830527795581254Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-31137
NC_012691:2476223:2498852249885225002971446Tolumonas auensis DSM 9187, complete genomeCP4-57 prophage; hypothetical protein2e-31137
NC_015761:299386:3070563070563085491494Salmonella bongori NCTC 12419, complete genomeprophage membrane protein1e-26121
NC_012759:2633949:2642819264281926442281410Escherichia coli BW2952 chromosome, complete genomeCP4-57 prophage protein5e-26119
NC_000913:2746886:2757007275700727584161410Escherichia coli K12, complete genomeCP4-57 prophage; predicted protein5e-26119
NC_010473:2839902:2848772284877228501811410Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-57 prophage; predicted protein5e-26119
AC_000091:2747520:2757641275764127590501410Escherichia coli W3110 DNA, complete genomehypothetical protein5e-26119
NC_013353:3853082:3884833388483338862661434Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-25117
AP010958:3853082:3884833388483338862661434Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein2e-25117
NC_008322:2077628:2086695208669520881611467Shewanella sp. MR-7, complete genomehypothetical protein9e-24111
NC_004431:1119700:1132944113294411344041461Escherichia coli CFT073, complete genomeHypothetical protein yfjI6e-23108
NC_018678:2382708:2390336239033623918411506Alteromonas macleodii str. 'English Channel 673' chromosome,hypothetical protein7e-23108
NC_012791:721813:7399787399787414951518Variovorax paradoxus S110 chromosome 1, complete genomehypothetical protein7e-23108
NC_012691:1250385:1271066127106612725021437Tolumonas auensis DSM 9187, complete genomeCP4-57 prophage; hypothetical protein8e-23108
NC_013364:1257801:1269648126964812710811434Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-22107
NC_013361:1284579:1296428129642812978611434Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-22107
NC_012912:1053618:1070772107077210721841413Dickeya zeae Ech1591, complete genomeCP4-57 prophage; hypothetical protein2e-22107
NC_010634:1342393:1348313134831313497491437Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein1e-21104
NC_007946:1073135:1086378108637810878291452Escherichia coli UTI89, complete genomehypothetical protein YfjI3e-21103
NC_002655:1448605:1459641145964114610441404Escherichia coli O157:H7 EDL933, complete genomehypothetical protein1e-20101
NC_002655:1053082:1064034106403410654371404Escherichia coli O157:H7 EDL933, complete genomehypothetical protein1e-20101
NC_013008:1307392:1318446131844613198311386Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-20101
NC_011353:1307106:1318160131816013195451386Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein2e-20101
NC_002695:1364833:1375887137588713772721386Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-20101
NC_011083:4547825:4575661457566145772651605Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein3e-20100
NC_009832:1946401:1954913195491319563461434Serratia proteamaculans 568, complete genomehypothetical protein1e-1997.8
NC_011751:3453683:3510875351087535123831509Escherichia coli UMN026 chromosome, complete genomehypothetical protein6e-1995.9
NC_004431:3409389:3487786348778634892941509Escherichia coli CFT073, complete genomeHypothetical protein yfjI6e-1995.9
NC_020064:3609844:3627627362762736291891563Serratia marcescens FGI94, complete genomehypothetical protein7e-1995.5
NC_020181:5130513:5138731513873151401881458Enterobacter aerogenes EA1509E, complete genomehypothetical protein1e-1791.7
NC_008321:1993541:2003786200378620052851500Shewanella sp. MR-4, complete genomehypothetical protein1e-1791.7
NC_011745:291422:301178301178301948771Escherichia coli ED1a chromosome, complete genome1e-1791.3
NC_005085:1269787:1311545131154513129541410Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein1e-1688.6
NC_015381:1558263:1566319156631915679381620Burkholderia gladioli BSR3 chromosome 1, complete sequenceCP4-57 prophage; hypothetical protein1e-1584.7
NC_008253:3941938:3970733397073339724151683Escherichia coli 536, complete genomehypothetical protein3e-1583.6
NC_008577:2115440:2122846212284621243151470Shewanella sp. ANA-3 chromosome 1, complete sequencehypothetical protein3e-1583.6
NC_009138:467268:4767694767694782231455Herminiimonas arsenicoxydans, complete genomeCP4-57 prophage; conserved hypothetical protein5e-1479.3
NC_015740:2407500:2419559241955924210581500Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein2e-1377.8
NC_011000:2831183:2854505285450528559741470Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein2e-1377.4
NC_014153:3084356:3103690310369031051801491Thiomonas intermedia K12 chromosome, complete genomehypothetical protein1e-1274.7
NC_008740:443274:4542504542504557551506Marinobacter aquaeolei VT8, complete genomehypothetical protein8e-1065.5
NC_015957:8777644:8785823878582387881682346Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein3e-0963.5
NC_011000:1216430:1226078122607812275351458Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein5e-0963.2
NC_009138:1843998:1876590187659018780411452Herminiimonas arsenicoxydans, complete genomeCP4-57 prophage; conserved hypothetical protein8e-0962
NC_009138:668000:6838256838256851471323Herminiimonas arsenicoxydans, complete genomeconserved hypothetical protein, putative prophage protein similar to protein of phage CP4-57 of E. coli (YfjI)5e-0859.7
NC_009659:1050532:1107984110798411094351452Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein5e-0859.7
NC_009615:2503465:2509460250946025108271368Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein2e-0757.4
NC_007802:224470:2272782272782288011524Jannaschia sp. CCS1, complete genomehypothetical protein3e-0757
NC_020911:1859210:1867785186778518692451461Octadecabacter antarcticus 307, complete genomehypothetical protein4e-0756.6
NC_014624:1549312:1553407155340715552091803Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein7e-0755.8
NC_009434:1580205:1593692159369215953201629Pseudomonas stutzeri A1501, complete genomehypothetical protein2e-0653.9
NC_012108:1973861:1993336199333619958582523Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein4e-0653.1
NC_014815:3272791:3291958329195832935561599Micromonospora sp. L5 chromosome, complete genomehypothetical protein8e-0652.4