Pre_GI: BLASTP Hits

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Query: NC_017319:192482:220947 Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence

Start: 220947, End: 221084, Length: 138

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013716:5141269:515348751534875154065579Citrobacter rodentium ICC168, complete genomeT3SS effector protein NleF4e-0857
NC_013353:2272919:228339422833942283963570Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector NleF3e-0753.9
AP010958:2272919:228339422833942283963570Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS secreted effector NleF-like protein3e-0753.9
NC_013941:1613595:162479016247901625359570Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein5e-0753.1
NC_013361:1754346:176723717672371767806570Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS effector NleF5e-0753.1
NC_013008:1715831:172623617262361726805570Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector5e-0753.1
NC_011601:1466496:147770114777011478270570Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS secreted effector NleF-like protein5e-0753.1
NC_002695:1794635:180567018056701806239570Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein5e-0753.1
NC_002655:2264773:228093822809382281507570Escherichia coli O157:H7 EDL933, complete genomehypothetical protein5e-0753.1