Pre_GI: BLASTP Hits

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Query: NC_017179:4023139:4029943 Clostridium difficile BI1, complete genome

Start: 4029943, End: 4030326, Length: 384

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015977:2966971:298340629834062983789384Roseburia hominis A2-183 chromosome, complete genomeconjugative transposon protein4e-55213
NC_009089:428075:452608452608452997390Clostridium difficile 630, complete genomeconjugative transposon protein3e-51200
NC_016630:1247251:126400612640061264389384Filifactor alocis ATCC 35896 chromosome, complete genomehypothetical protein1e-41168
NC_013895:1332832:136865113686511369037387Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completehypothetical protein2e-41167
NC_009089:581655:586031586031586417387Clostridium difficile 630, complete genomeconjugative transposon protein4e-41166
NC_009089:3889811:390957939095793909956378Clostridium difficile 630, complete genomeconjugative transposon conserved hypothetical protein6e-41165
NC_004668:2198027:226595722659572266328372Enterococcus faecalis V583, complete genomehypothetical protein2e-37154
NC_009089:3935500:396323639632363963619384Clostridium difficile 630, complete genomeconjugative transposon protein2e-33140
NC_011593:1163000:117597311759731176353381Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,hypothetical protein1e-1478.2
NC_000964:521975:532483532483532863381Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein3e-0857.4