Pre_GI: BLASTP Hits

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Query: NC_016822:4889656:4889656 Shigella sonnei 53G, complete genome

Start: 4889656, End: 4890558, Length: 903

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012759:4433500:445016444501644451066903Escherichia coli BW2952 chromosome, complete genomeiron-dicitrate transporter substrate-binding subunit3e-172603
AC_000091:4501430:451808645180864518988903Escherichia coli W3110 DNA, complete genomeiron-dicitrate transporter subunit3e-172603
NC_000913:4494773:451142945114294512331903Escherichia coli K12, complete genomeKpLE2 phage-like element; iron-dicitrate transporter subunit3e-172603
NC_010473:4596500:461323746132374614139903Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; iron-dicitrate transporter subunit; periplasmic-binding component of ABC superfamily3e-172603
NC_014228:3591758:360334936033493604248900Xenorhabdus nematophila ATCC 19061, complete genomeIron(III) dicitrate-binding periplasmic protein precursor FecB5e-136483
NC_004547:1174650:120461912046191205533915Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeiron(III) dicitrate-binding periplasmic protein6e-122437
NC_012962:4591295:460186646018664602774909Photorhabdus asymbiotica, complete genomeiron(iii) dicitrate-binding periplasmic protein fecb5e-121434
NC_016612:3843358:386816338681633869065903Klebsiella oxytoca KCTC 1686 chromosome, complete genomeiron-dicitrate transporter substrate-binding subunit8e-120430
NC_006510:2910000:292648229264822927423942Geobacillus kaustophilus HTA426, complete genomeferrichrome ABC transporter (substrate-binding protein)4e-26119
NC_014915:3039639:304614030461403047081942Geobacillus sp. Y412MC52 chromosome, complete genomeperiplasmic binding protein4e-26118
NC_014622:3955851:3978024397802439797451722Paenibacillus polymyxa SC2 chromosome, complete genomeABC fe(3+) transporter permease4e-2099
NC_003450:3266604:3284397328439732854251029Corynebacterium glutamicum ATCC 13032, complete genomeABC-type transport systems, periplasmic component3e-1995.9
NC_006958:3240019:3257704325770432587321029Corynebacterium glutamicum ATCC 13032, complete genomeABC-type cobalamin/Fe3+-siderophores transport system, secreted component3e-1995.9
NC_016641:5671186:569648056964805697478999Paenibacillus terrae HPL-003 chromosome, complete genomeiron iii dicitrate transport protein9e-1994.4
NC_000911:15937:167401674017687948Synechocystis sp. PCC 6803, complete genomeiron(III) dicitrate transport system permease protein; FecB4e-1789
NC_017039:15937:167401674017687948Synechocystis sp. PCC 6803 substr. PCC-P, complete genomeiron(III) dicitrate transport system permeaseprotein4e-1789
NC_017052:15937:167401674017687948Synechocystis sp. PCC 6803 substr. PCC-N, complete genomeiron(III) dicitrate transport system permeaseprotein4e-1789
NC_017277:15937:167401674017687948Synechocystis sp. PCC 6803, complete genomeiron(III) dicitrate transport system permeaseprotein4e-1789
NC_005957:4311679:432630743263074327281975Bacillus thuringiensis serovar konkukian str. 97-27, completeiron compound ABC transporter, iron compound-binding protein2e-1687
NC_019897:3669888:3669888366988836709221035Thermobacillus composti KWC4 chromosome, complete genomeFe3+-hydroxamate ABC transporter substrate-binding protein2e-1480.1
NC_014622:3955851:3980635398063539816751041Paenibacillus polymyxa SC2 chromosome, complete genomeiron(III) dicitrate ABC transporter permease3e-1479.3
NC_016932:1041306:105460710546071055512906Corynebacterium pseudotuberculosis 316 chromosome, complete genomeIron ABC transporter substrate-binding protein9e-1477.8
NC_015683:1146913:115738311573831158288906Corynebacterium ulcerans BR-AD22 chromosome, complete genomeiron ABC transporter substrate-binding protein1e-1377.4
NC_016781:1039716:106304810630481063887840Corynebacterium pseudotuberculosis 3/99-5 chromosome, completeiron ABC transporter substrate-binding protein1e-1377.4
NC_017317:1143378:115453311545331155438906Corynebacterium ulcerans 809 chromosome, complete genomeiron ABC transport system substrate-binding protein1e-1377.4
NC_017031:1039548:106281410628141063719906Corynebacterium pseudotuberculosis P54B96 chromosome, completeIron ABC transporter substrate-binding protein1e-1377.4
NC_017301:1037519:106262710626271063532906Corynebacterium pseudotuberculosis C231 chromosome, completeIron ABC transporter substrate-binding protein1e-1377.4
NC_017303:1039562:106282810628281063733906Corynebacterium pseudotuberculosis I19 chromosome, complete genomeIron ABC transporter substrate-binding protein1e-1377.4
NC_017305:1037133:106039910603991061304906Corynebacterium pseudotuberculosis PAT10 chromosome, completeIron ABC transporter substrate-binding protein1e-1377.4
NC_017300:1045555:106046410604641061369906Corynebacterium pseudotuberculosis 1002 chromosome, completeIron ABC transporter substrate-binding protein1e-1377
NC_014329:1041556:106299110629911063896906Corynebacterium pseudotuberculosis FRC41 chromosome, completeiron ABC transporter substrate-binding protein1e-1377
NC_014563:19307:354133541336321909Pantoea vagans C9-1 plasmid pPag2, complete sequenceAchromobactin-binding periplasmic protein precursor6e-1375.1
NC_005955:1205836:122006012200601220959900Bartonella quintana str. Toulouse, complete genomeFerric anguibactin-binding protein1e-1170.9
NC_012846:1837924:185235218523521853302951Bartonella grahamii as4aup, complete genomeferric anguibactin-binding protein2e-1170.1
NC_010161:1914000:192907519290751930025951Bartonella tribocorum CIP 105476, complete genomeferric anguibactin-binding protein2e-1169.7
NC_006371:1973500:198304319830431983993951Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical protein1e-1067.8
NC_010184:3213347:323090632309063231814909Bacillus weihenstephanensis KBAB4, complete genomeperiplasmic binding protein5e-1065.5
NC_004193:375416:5751775751775762051029Oceanobacillus iheyensis HTE831, complete genomeferrichrome ABC transporter binding protein6e-0961.6
NC_013956:3273340:329930032993003300244945Pantoea ananatis LMG 20103 chromosome, complete genomeFatB7e-0961.6
NC_016816:1137904:113790411379041138848945Pantoea ananatis LMG 5342, complete genomeiron siderophore (ferrichrome) ABC transporter substrate-binding protein1e-0861.2
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome3e-0859.7
NC_017277:15937:2410124101251441044Synechocystis sp. PCC 6803, complete genomehypothetical protein3e-0859.7
NC_017052:15937:2410124101251441044Synechocystis sp. PCC 6803 substr. PCC-N, complete genomehypothetical protein3e-0859.7
NC_017039:15937:2410124101251441044Synechocystis sp. PCC 6803 substr. PCC-P, complete genomehypothetical protein3e-0859.7
NC_000911:15937:2410124101251441044Synechocystis sp. PCC 6803, complete genomehypothetical protein3e-0859.7
NC_003272:2560329:2576629257662925777141086Nostoc sp. PCC 7120, complete genomeferrichrome binding protein of ABC transporter9e-0857.8
NC_010545:404111:4170444170444180601017Corynebacterium urealyticum DSM 7109, complete genomeputative iron ABC transport system, solute binding protein9e-0857.8
NC_007164:2046937:2065585206558520666011017Corynebacterium jeikeium K411, complete genomeputative iron ABC transport system, solute binding protein9e-0857.8
NC_008570:1852286:186623018662301867051822Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeperiplasmic binding protein1e-0757
NC_008701:195850:2139832139832160312049Pyrobaculum islandicum DSM 4184, complete genomeperiplasmic binding protein2e-0757
NC_010120:199942:221885221885222850966Neisseria meningitidis 053442, complete genomeiron(III) ABC transporter, periplasmic binding protein5e-0755.5
NC_017160:4508000:451075445107544511707954Yersinia pestis D182038 chromosome, complete genomeputative iron transport protein6e-0755.1
NC_010465:62348:795577955780510954Yersinia pseudotuberculosis YPIII, complete genomeperiplasmic binding protein6e-0755.1
NC_009342:464210:500065500065500946882Corynebacterium glutamicum R chromosome, complete genomehypothetical protein8e-0754.7
NC_009348:2836969:284033728403372841143807Aeromonas salmonicida subsp. salmonicida A449, complete genomecobalamin binding protein BtuF1e-0654.3
NC_017316:2466244:248510924851092486062954Enterococcus faecalis OG1RF chromosome, complete genomeferric (Fe+3) ABC superfamily ATP binding cassette transporter, binding protein9e-0754.3
NC_011992:1038985:105606410560641056954891Acidovorax ebreus TPSY, complete genomeperiplasmic binding protein2e-0653.5
NC_007907:321537:3358173358173368271011Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-0653.1
NC_017200:4240500:424055542405554241499945Bacillus thuringiensis serovar finitimus YBT-020 chromosome,iron compound ABC transporter substrate-binding protein2e-0653.1
NC_008010:105665:126435126435127304870Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceperiplasmic binding protein3e-0652.8
NC_014483:1376500:1383180138318013841871008Paenibacillus polymyxa E681 chromosome, complete genomeABC-type Fe3+-hydroxamate transport system, periplasmic component7e-0651.6
NC_004668:2938000:295748529574852958438954Enterococcus faecalis V583, complete genomeiron compound ABC transporter, substrate-binding protein8e-0651.6
NC_016641:3173250:3180233318023331812371005Paenibacillus terrae HPL-003 chromosome, complete genomeFe3+-hydroxamate ABC transporter periplasmic protein9e-0651.2