Pre_GI: BLASTP Hits

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Query: NC_016822:1304398:1310317 Shigella sonnei 53G, complete genome

Start: 1310317, End: 1310664, Length: 348

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:1320287:132747313274731327823351Shigella sonnei Ss046, complete genome9e-62234
NC_011415:2153243:216737321673732168098726Escherichia coli SE11 chromosome, complete genomehypothetical protein5e-61232
NC_008258:1934479:195113619511361951486351Shigella flexneri 5 str. 8401, complete genomehypothetical protein5e-61232
NC_008150:1593500:161406016140601614875816Yersinia pestis Antiqua, complete genomehypothetical protein8e-29125
NC_010634:2297000:231661023166102317425816Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein9e-29125
NC_004547:2810151:282692928269292827279351Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeconserved hypothetical protein (partial)3e-28123
NC_009654:4253431:425557942555794256442864Marinomonas sp. MWYL1, complete genomehypothetical protein7e-1785.9
NC_009348:3029963:306470130647013065576876Aeromonas salmonicida subsp. salmonicida A449, complete genomehypothetical protein1e-1168.9
NC_011831:4043802:404380240438024044656855Chloroflexus aggregans DSM 9485, complete genomeprotein of unknown function DUF723e-1063.9
NC_005027:4180502:418446241844624185385924Rhodopirellula baltica SH 1, complete genomehypothetical protein2e-0754.7
NC_009767:2866668:289419428941942895075882Roseiflexus castenholzii DSM 13941, complete genomeprotein of unknown function DUF722e-0754.3