Pre_GI: BLASTP Hits

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Query: NC_016582:3268857:3272268 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 3272268, End: 3272597, Length: 330

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006361:4098469:4136309413630941376191311Nocardia farcinica IFM 10152, complete genomeputative phage terminase2e-2097.8
NC_015859:952500:9798429798429810441203Corynebacterium variabile DSM 44702 chromosome, complete genomehypothetical protein4e-2096.7
NC_015437:1494777:1501104150110415023541251Selenomonas sputigena ATCC 35185 chromosome, complete genomephage terminase, large subunit, PBSX family2e-1787.8
NC_014657:914071:9187599187599199731215Caldicellulosiruptor owensensis OL chromosome, complete genomephage terminase, large subunit, pbsx family4e-1786.7
NC_009706:2023912:2035519203551920367901272Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein3e-1683.6
NC_012590:2176948:2182403218240321846582256Corynebacterium aurimucosum ATCC 700975, complete genomeputative phage terminase6e-1579.7
NC_012590:2117027:2131635213163521328791245Corynebacterium aurimucosum ATCC 700975, complete genomePhage terminase large subunit2e-1374.3
NC_014833:1488994:1496168149616814973971230Ruminococcus albus 7 chromosome, complete genomephage terminase large subunit, PBSX family4e-1373.2
NC_013891:1639694:1651735165173516530271293Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomephage terminase large subunit4e-1270.1
NC_017191:2223740:2228137222813722293421206Bacillus amyloliquefaciens XH7 chromosome, complete genomephage terminase4e-1270.1
NC_017188:2221705:2226102222610222273071206Bacillus amyloliquefaciens TA208 chromosome, complete genomePBSX family phage terminase large subunit4e-1270.1
NC_008526:1924761:1927493192749319287461254Lactobacillus casei ATCC 334, complete genomePhage terminase large subunit8e-1268.9
NC_015416:1679188:1695531169553116967991269Methanosaeta concilii GP-6 chromosome, complete genomephage terminase, large subunit, PBSx family1e-1168.6
NC_020272:2748733:2780373278037327815871215Bacillus amyloliquefaciens IT-45, complete genomePhage terminase large subunit1e-1168.2
NC_003155:6667928:6692327669232766936251299Streptomyces avermitilis MA-4680, complete genomephage-related terminase large subunit2e-1167.4
NC_021182:2536000:2555154255515425564251272Clostridium pasteurianum BC1, complete genomephage terminase, large subunit, PBSX family3e-1167.4
NC_008497:1111891:1114282111428211155441263Lactobacillus brevis ATCC 367, complete genomePhage terminase large subunit5e-1166.6
NC_008525:780500:7967967967967980671272Pediococcus pentosaceus ATCC 25745, complete genomePhage terminase large subunit8e-1165.9
NC_017341:1976000:2002289200228920034971209Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,phage terminase, large subunit4e-1063.5
NC_004557:1141558:1154592115459211559351344Clostridium tetani E88, complete genomephage terminase large subunit5e-1063.2
NC_008530:646207:6573286573286585721245Lactobacillus gasseri ATCC 33323, complete genomePhage terminase large subunit, ATPase6e-1062.8
NC_009632:361229:3791313791313803391209Staphylococcus aureus subsp. aureus JH1 chromosome, completePBSX family phage terminase large subunit3e-0960.5
NC_009487:362475:3790613790613802691209Staphylococcus aureus subsp. aureus JH9 chromosome, completePBSX family phage terminase large subunit3e-0960.5
NC_015275:986382:9890329890329902911260Clostridium lentocellum DSM 5427 chromosome, complete genomephage terminase, large subunit, PBSX family8e-0959.3
NC_013171:896802:9137289137289149661239Anaerococcus prevotii DSM 20548, complete genomephage terminase, large subunit, PBSX family3e-0857
NC_009641:327325:3385703385703397931224Staphylococcus aureus subsp. aureus str. Newman chromosome,phage terminase large subunit8e-0855.8