Pre_GI: BLASTP Hits

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Query: NC_013716:5020204:5032100 Citrobacter rodentium ICC168, complete genome

Start: 5032100, End: 5035480, Length: 3381

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015761:1630000:1635545163554516389673423Salmonella bongori NCTC 12419, complete genomehypothetical protein01102
NC_011149:1429523:1456499145649914599213423Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein01082
NC_010067:1414000:1423445142344514268313387Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein01045
NC_013364:1477248:1487124148712414905253402Escherichia coli O111:H- str. 11128, complete genomeT3SS secreted effector EspN0752
NC_013361:3597812:3607819360781936112203402Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS effector EspN0749
NC_002695:1571389:1582102158210215855033402Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein0749
NC_011353:1513000:1523030152303015264313402Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein0749
NC_013353:1305712:1315651131565113189773327Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector EspN0735
AP010958:1305712:1315651131565113189773327Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS secreted effector EspN-homolog0735
NC_013008:1513000:1523906152390615267192814Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector0645
NC_002655:1655944:1666666166666616694792814Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by prophage CP-933N0639
NC_002655:1655944:166607716660771666661585Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by prophage CP-933N7e-20100
NC_007946:4779745:4817383481738348204273045Escherichia coli UTI89, complete genomecytotoxic necrotizing factor 12e-1482.4