Pre_GI: BLASTP Hits

Some Help

Query: NC_013410:2253631:2253631 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2253631, End: 2254896, Length: 1266

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013943:2361617:2378144237814423794751332Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeammonium transporter2e-79296
NC_014933:2525393:2533927253392725353481422Bacteroides helcogenes P 36-108 chromosome, complete genomeammonium transporter8e-72271
NC_009614:4918877:4929676492967649310341359Bacteroides vulgatus ATCC 8482 chromosome, complete genomeammonium transporter6e-70265
NC_014532:110875:1138031138031150441242Halomonas elongata DSM 2581, complete genomeammonium transporter3e-68259
NC_012781:629761:6467086467086484651758Eubacterium rectale ATCC 33656, complete genomeadenylate/guanylate cyclase3e-68259
NC_015500:484984:4849844849844867261743Treponema brennaborense DSM 12168 chromosome, complete genomeammonium transporter2e-67256
NC_020304:256000:2563732563732577281356Desulfocapsa sulfexigens DSM 10523, complete genomeammonium transporter1e-65250
NC_013517:599949:6150796150796163471269Sebaldella termitidis ATCC 33386, complete genomeammonium transporter7e-63241
NC_007205:60069:6006960069622042136Candidatus Pelagibacter ubique HTCC1062, complete genomeAmmonium transporter family protein1e-62241
NC_009925:6024888:6043838604383860485324695Acaryochloris marina MBIC11017, complete genometwo-component hybrid sensor and regulator histidine kinase2e-59229
NC_015690:7422911:7440643744064374419321290Paenibacillus mucilaginosus KNP414 chromosome, complete genomeammonium transporter1e-56220
NC_016935:7512884:7530614753061475319031290Paenibacillus mucilaginosus 3016 chromosome, complete genomeammonium transporter1e-56220
NC_018691:4619245:4635167463516746364261260Alcanivorax dieselolei B5 chromosome, complete genomeRh-like protein/ammonium transporter3e-56219
NC_007645:6500059:6538405653840565396761272Hahella chejuensis KCTC 2396, complete genomeammonium transporter3e-56219
NC_007205:60069:6232362323645602238Candidatus Pelagibacter ubique HTCC1062, complete genomeAmmonium transporter family protein9e-56218
NC_018868:2867500:2891195289119528924271233Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeammonium transporter6e-55215
NC_009932:39348:4156741567433811815Acaryochloris marina MBIC11017 plasmid pREB7, complete sequenceammonium transporter5e-53208
NC_014122:842560:8573058573058585461242Methanocaldococcus infernus ME chromosome, complete genomeammonium transporter7e-49195
NC_009483:2640403:2660307266030726615271221Geobacter uraniireducens Rf4 chromosome, complete genomeRh family protein/ammonium transporter6e-46185
NC_013156:573037:5744045744045755551152Methanocaldococcus fervens AG86, complete genomeammonium transporter1e-40167
NC_007644:161222:1883131883131897161404Moorella thermoacetica ATCC 39073, complete genomeammonium transporter2e-39163
NC_014323:625155:6364956364956377001206Herbaspirillum seropedicae SmR1 chromosome, complete genomeammonium transporter transmembrane protein6e-39162
NC_006513:2708213:2724179272417927253811203Azoarcus sp. EbN1, complete genomeputative ammonium transporter3e-38159
NC_013959:1059004:1062736106273610639381203Sideroxydans lithotrophicus ES-1 chromosome, complete genomeammonium transporter9e-38158
NC_020304:1977249:1982799198279919840221224Desulfocapsa sulfexigens DSM 10523, complete genomeammonium transporter1e-37157
NC_014931:4490526:4504459450445945056611203Variovorax paradoxus EPS chromosome, complete genomeammonium transporter1e-37157
NC_017068:2569609:2571523257152325728361314Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative ammonium transporter NrgA4e-36152
NC_013385:1882549:1890155189015518914591305Ammonifex degensii KC4, complete genomeammonium transporter3e-35150
NC_007404:1776147:1792571179257117937731203Thiobacillus denitrificans ATCC 25259, complete genomeputative ammonium transporter3e-35149
NC_018876:1061682:1061682106168210628781197Methanolobus psychrophilus R15 chromosome, complete genomeammonium transporter2e-34147
NC_016616:1091606:1094955109495510961601206Dechlorosoma suillum PS chromosome, complete genomeammonia permease5e-34145
NC_015656:132633:1354911354911367861296Frankia symbiont of Datisca glomerata chromosome, complete genomeammonium transporter2e-33144
NC_007681:770267:7742067742067754291224Methanosphaera stadtmanae DSM 3091, complete genomeammonium transporter7e-33142
NC_015318:426707:4282164282164295111296Hippea maritima DSM 10411 chromosome, complete genomeammonium transporter9e-33141
NC_011296:1636242:1636595163659516379381344Thermodesulfovibrio yellowstonii DSM 11347, complete genomeammonium transporter1e-32141
NC_014666:7838500:7839782783978278411251344Frankia sp. EuI1c chromosome, complete genomeammonium transporter1e-32140
NC_007510:3340008:3341542334154233430561515Burkholderia sp. 383 chromosome 1, complete sequenceAmmonium transporter3e-32139
NC_015975:789312:8103168103168116261311Lactobacillus ruminis ATCC 27782 chromosome, complete genomeAmmonium transporter1e-31137
NC_010322:1817598:1865309186530918665171209Pseudomonas putida GB-1 chromosome, complete genomeRh family protein/ammonium transporter6e-31135
NC_015681:1558873:1559435155943515606491215Thermodesulfatator indicus DSM 15286 chromosome, complete genomeammonium transporter6e-31135
NC_016830:6589575:6595264659526465965621299Pseudomonas fluorescens F113 chromosome, complete genomeprotein AmtB1e-30134
NC_014624:287500:2876222876222888271206Eubacterium limosum KIST612 chromosome, complete genomeputative ammonium transporter family1e-30134
NC_015318:426707:4267074267074280021296Hippea maritima DSM 10411 chromosome, complete genomeammonium transporter9e-31134
NC_010622:249625:3002553002553017601506Burkholderia phymatum STM815 chromosome 1, complete sequenceammonium transporter3e-30133
NC_012856:207194:2314892314892330631575Ralstonia pickettii 12D chromosome 1, complete genomeammonium transporter4e-30132
NC_015164:2859000:2892299289229928936631365Bacteroides salanitronis DSM 18170 chromosome, complete genomeammonium transporter1e-29130
NC_013204:2955500:2955915295591529571891275Eggerthella lenta DSM 2243, complete genomeammonium transporter3e-28126
NC_015737:2050219:2066723206672320679641242Clostridium sp. SY8519, complete genomeammonia permease3e-28126
NC_012785:205502:2246632246632259041242Kosmotoga olearia TBF 19.5.1, complete genomeammonium transporter3e-28126
NC_015567:1127780:1132001113200111332871287Serratia sp. AS9 chromosome, complete genomeammonium transporter4e-28125
NC_015566:1127595:1131816113181611331021287Serratia sp. AS12 chromosome, complete genomeammonium transporter4e-28125
NC_013854:330543:3502453502453516871443Azospirillum sp. B510, complete genomeammonium transporter5e-28125
NC_020389:714178:7301137301137313061194Methanosarcina mazei Tuc01, complete genomeAmmonium transporter3e-26120
NC_003901:860242:8817148817148829131200Methanosarcina mazei Go1, complete genomeammonium transporter3e-26120
NC_018644:1197897:1201772120177212030491278Alpha proteobacterium HIMB59 chromosome, complete genomeammonium transporter family protein2e-26120
NC_015563:334942:3509333509333522851353Delftia sp. Cs1-4 chromosome, complete genomeammonium transporter3e-26119
NC_020291:6426704:6428110642811064293511242Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeammonium transporter NrgA6e-26119
NC_010162:3177324:3189588318958831908921305Sorangium cellulosum 'So ce 56', complete genomeammonium transporter7e-26118
NC_009484:429269:4292694292694305701302Acidiphilium cryptum JF-5 chromosome, complete genomeammonium transporter2e-25117
NC_010524:4402478:4418402441840244199161515Leptothrix cholodnii SP-6, complete genomeammonium transporter5e-25115
NC_014972:2328228:2355197235519723565971401Desulfobulbus propionicus DSM 2032 chromosome, complete genomeammonium transporter5e-25115
NC_018080:6048516:6050926605092660522541329Pseudomonas aeruginosa DK2 chromosome, complete genomeammonium transporter AmtB1e-24114
NC_017171:280762:2959622959622973591398Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeammonium transporter3e-24113
NC_017162:270460:2935692935692949661398Acinetobacter baumannii 1656-2 chromosome, complete genomeAmmonium transport protein3e-24113
NC_010611:240839:2661082661082675051398Acinetobacter baumannii ACICU, complete genomeAmmonia permease3e-24113
NC_009656:6224221:6224221622422162255491329Pseudomonas aeruginosa PA7 chromosome, complete genomeammonium transporter7e-24112
NC_011586:268927:3283683283683297651398Acinetobacter baumannii AB0057 chromosome, complete genomeammonium transporter4e-24112
NC_013939:1417750:1432456143245614337121257Deferribacter desulfuricans SSM1, complete genomeammonium transporter Amt family8e-24111
NC_013209:1969734:1980939198093919823901452Acetobacter pasteurianus IFO 3283-01, complete genometransporter of Ammonium AmtB2e-23110
NC_017100:1972389:1983594198359419850451452Acetobacter pasteurianus IFO 3283-03, complete genometransporter of Ammonium AmtB2e-23110
NC_017108:1969716:1980921198092119823721452Acetobacter pasteurianus IFO 3283-12, complete genometransporter of Ammonium AmtB2e-23110
NC_017111:1969704:1980909198090919823601452Acetobacter pasteurianus IFO 3283-32, complete genometransporter of Ammonium AmtB2e-23110
NC_017121:1969716:1980921198092119823721452Acetobacter pasteurianus IFO 3283-07, complete genometransporter of Ammonium AmtB2e-23110
NC_017125:1972384:1983589198358919850401452Acetobacter pasteurianus IFO 3283-22, complete genometransporter of Ammonium AmtB2e-23110
NC_017146:1972396:1983601198360119850521452Acetobacter pasteurianus IFO 3283-26, complete genometransporter of Ammonium AmtB2e-23110
NC_017150:1877480:1888685188868518901361452Acetobacter pasteurianus IFO 3283-01-42C, complete genometransporter of Ammonium AmtB2e-23110
NC_010410:3606826:3606826360682636082231398Acinetobacter baumannii AYE, complete genomeammonium transport protein (Amt family)2e-23110
NC_006448:465656:4732124732124744951284Streptococcus thermophilus LMG 18311, complete genomeammonium uptake transporter8e-23108
NC_008532:469888:4774784774784787131236Streptococcus thermophilus LMD-9, complete genomeAmmonia permease2e-22107
NC_014034:3570034:3589181358918135905421362Rhodobacter capsulatus SB1003 chromosome, complete genomeammonium transporter3e-22106
NC_016616:760145:7643797643797657791401Dechlorosoma suillum PS chromosome, complete genomeammonium transporter9e-22105
NC_020209:4549563:4555244455524445565811338Pseudomonas poae RE*1-1-14, complete genomeammonium transporter1e-21104
NC_014334:589526:5920275920275933431317Lactobacillus casei str. Zhang chromosome, complete genomeammonia permease3e-21103
NC_002947:5961096:5966352596635259676831332Pseudomonas putida KT2440, complete genomeammonium transporter4e-21102
NC_011420:2803196:2822091282209128234311341Rhodospirillum centenum SW, complete genomeammonia transporter4e-2099.4
NC_016027:1647110:1647511164751116488901380Gluconacetobacter xylinus NBRC 3288, complete genomeammonium transporter5e-2099
NC_015138:322386:3267723267723282081437Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeammonium transporter7e-2098.6
NC_004578:212468:2407282407282420651338Pseudomonas syringae pv. tomato str. DC3000, complete genomeammonium transporter7e-2098.6
NC_008786:3681847:3696475369647536980131539Verminephrobacter eiseniae EF01-2, complete genomeammonium transporter9e-2098.6
NC_008752:261903:2625102625102637301221Acidovorax avenae subsp. citrulli AAC00-1, complete genome1e-1997.8
NC_015277:2702056:2714897271489727162161320Sphingobacterium sp. 21 chromosome, complete genomeammonium transporter4e-1996.3
NC_015435:607345:6206456206456220151371Metallosphaera cuprina Ar-4 chromosome, complete genomeammonium transporter5e-1789.4
NC_018643:857911:8726708726708740701401Alpha proteobacterium HIMB5 chromosome, complete genomeammonium transporter family protein1e-1688.2
NC_007205:1232734:1245857124585712472571401Candidatus Pelagibacter ubique HTCC1062, complete genomeammonium transporter2e-1583.6
NC_008701:1310857:1326751132675113279921242Pyrobaculum islandicum DSM 4184, complete genomeRh family protein/ammonium transporter2e-1273.9
NC_012779:1966205:197725519772551977824570Edwardsiella ictaluri 93-146, complete genomeammonium transporter1e-0861.6