Pre_GI: BLASTP Hits

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Query: NC_013410:2037840:2058492 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2058492, End: 2058926, Length: 435

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015499:1790186:179550217955021796221720Thermodesulfobium narugense DSM 14796 chromosome, complete genomeiron (metal) dependent repressor, DtxR family1e-2098.2
NC_015574:806762:820865820865821323459Methanobacterium sp. SWAN-1 chromosome, complete genomeiron (metal) dependent repressor, DtxR family4e-2096.7
NC_012658:1658505:167473416747341675096363Clostridium botulinum Ba4 str. 657 chromosome, complete genomeputative iron-dependent repressor3e-1890.5
NC_017297:1700000:171833017183301718689360Clostridium botulinum F str. 230613 chromosome, complete genomeputative iron-dependent repressor2e-1787.8
NC_009699:1698951:171819717181971718556360Clostridium botulinum F str. Langeland chromosome, complete genomeiron-dependent repressor2e-1787.8
NC_002936:67896:923739237393089717Dehalococcoides ethenogenes 195, complete genomeiron dependent repressor, putative3e-1787
NC_013364:928486:933261933261933728468Escherichia coli O111:H- str. 11128, complete genomeDNA-binding transcriptional regulator5e-1786.3
NC_013353:922937:927712927712928179468Escherichia coli O103:H2 str. 12009, complete genomeDNA-binding transcriptional regulator of mntH5e-1786.3
AP010958:922937:927712927712928179468Escherichia coli O103:H2 str. 12009 DNA, complete genomeDNA-binding transcriptional regulator of mntH5e-1786.3
NC_015385:456000:476559476559476933375Treponema succinifaciens DSM 2489 chromosome, complete genomeiron (metal) dependent repressor, DtxR family8e-1785.9
NC_008554:4586543:461032446103244610857534Syntrophobacter fumaroxidans MPOB, complete genomeiron (metal) dependent repressor, DtxR family9e-1785.5
NC_014328:3747973:375371137537113754181471Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative metal dependent transcriptional regulator7e-1682.4
NC_012883:104987:122828122828123253426Thermococcus sibiricus MM 739, complete genomeManganese-dependent transcription regulator2e-1580.9
NC_003552:4277937:427936842793684279850483Methanosarcina acetivorans C2A, complete genomehypothetical protein3e-1580.5
NC_017243:1041917:104191710419171042333417Brachyspira intermedia PWS/A chromosome, complete genomeiron dependend repressor6e-1579.7
NC_014363:114239:156802156802157224423Olsenella uli DSM 7084 chromosome, complete genomeiron (metal) dependent repressor, DtxR family1e-1478.6
NC_009485:1604942:164018716401871640612426Bradyrhizobium sp. BTAi1 chromosome, complete genomemanganese transport regulator MntR2e-1477.8
NC_008698:903759:922126922126922572447Thermofilum pendens Hrk 5, complete genomeiron dependent repressor2e-1477.4
NC_014378:4428:204002040020885486Acetohalobium arabaticum DSM 5501 chromosome, complete genomeiron (metal) dependent repressor, DtxR family7e-1475.9
NC_013165:2240377:224037722403772240811435Slackia heliotrinireducens DSM 20476, complete genomeMn-dependent transcriptional regulator1e-1375.1
NC_015172:1471501:150546215054621505839378Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeiron (metal) dependent repressor, DtxR family3e-1373.9
NC_014219:2491021:250366525036652504102438Bacillus selenitireducens MLS10 chromosome, complete genomeiron (metal) dependent repressor, DtxR family4e-1373.6
NC_013203:1447340:146155614615561461984429Atopobium parvulum DSM 20469, complete genomeiron (metal) dependent repressor, DtxR family5e-1373.2
NC_010003:605961:624080624080624751672Petrotoga mobilis SJ95, complete genomeiron (metal) dependent repressor, DtxR family5e-1373.2
NC_006138:3355028:335673633567363357242507Desulfotalea psychrophila LSv54, complete genomeiron-dependent repressor6e-1372.8
NC_009253:2927802:294803529480352948469435Desulfotomaculum reducens MI-1 chromosome, complete genomeiron dependent repressor7e-1372.4
NC_015519:801929:801929801929802411483Tepidanaerobacter sp. Re1 chromosome, complete genomeiron (metal) dependent repressor, DtxR family1e-1272
NC_014408:1193239:121558712155871215982396Methanothermobacter marburgensis str. Marburg chromosome, completemetal-dependent transcriptional regulator1e-1272
NC_015555:211935:229660229660230130471Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeiron (metal) dependent repressor, DtxR family1e-1271.6
NC_014532:2989185:300928430092843009694411Halomonas elongata DSM 2581, complete genomemanganese transport regulator MntR7e-1269.3
NC_003551:154883:170934170934171410477Methanopyrus kandleri AV19, complete genomeMn-dependent transcriptional regulator1e-1168.6
NC_009776:617532:633366633366633743378Ignicoccus hospitalis KIN4/I, complete genomeiron dependent repressor1e-1168.2
NC_010001:1488000:150772215077221508087366Clostridium phytofermentans ISDg, complete genomeiron (metal) dependent repressor, DtxR family1e-1168.2
NC_018720:357716:362611362611363312702Bifidobacterium asteroides PRL2011 chromosome, complete genomeDtxR family transcriptional regulator2e-1167.8
NC_014376:3593500:360909336090933609512420Clostridium saccharolyticum WM1 chromosome, complete genomeiron dependent repressor4e-1166.6
NC_013204:1759985:177898117789811779364384Eggerthella lenta DSM 2243, complete genomeiron (metal) dependent repressor, DtxR family7e-1165.9
NC_016048:2873669:288808128880812888506426Oscillibacter valericigenes Sjm18-20, complete genomeputative transcriptional regulator9e-1165.5
NC_013741:27353:417484174842329582Archaeoglobus profundus DSM 5631, complete genomeiron (metal) dependent repressor, DtxR family3e-1063.9
NC_012471:1197534:123296812329681233348381Streptococcus equi subsp. equi 4047, complete genomeiron-dependent repressor protein6e-1062.8
NC_015954:2764919:280424728042472804924678Halophilic archaeon DL31 chromosome, complete genomeDtxR family iron (metal) dependent repressor2e-0857.8
NC_008148:672608:686182686182686865684Rubrobacter xylanophilus DSM 9941, complete genomeiron (metal) dependent repressor, DtxR family5e-0856.2
NC_012622:1333000:135303013530301353668639Sulfolobus islandicus Y.G.57.14 chromosome, complete genomeDtxR family iron (metal) dependent repressor2e-0754.3
NC_016788:527351:535848535848536462615Corynebacterium diphtheriae HC04 chromosome, complete genomeiron-dependent repressor ideR3e-0650.8
NC_016786:533537:545881545881546495615Corynebacterium diphtheriae HC01 chromosome, complete genomeiron-dependent repressor ideR3e-0650.8
NC_016782:537412:545910545910546524615Corynebacterium diphtheriae 241 chromosome, complete genomeiron-dependent repressor ideR3e-0650.8
NC_016783:537717:550061550061550675615Corynebacterium diphtheriae INCA 402 chromosome, complete genomeiron-dependent repressor ideR3e-0650.8