Pre_GI: BLASTP Hits

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Query: NC_012917:833721:833995 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 833995, End: 834246, Length: 252

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020908:4093560:410817841081784108423246Octadecabacter arcticus 238, complete genomeaddiction module antidote protein2e-1271.2
NC_017269:303500:319999319999320250252Vibrio cholerae LMA3984-4 chromosome II, complete sequenceStbD replicon stabilization protein (antitoxin to StbE)2e-1064.3
NC_016945:370471:419819419819420070252Vibrio cholerae IEC224 chromosome II, complete sequencehypothetical protein2e-1064.3
NC_002506:370629:419979419979420251273Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completehypothetical protein3e-1063.9
NC_009456:787322:834440834440834712273Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein3e-1063.9
NC_012583:361241:429230429230429502273Vibrio cholerae O395 chromosome chromosome II, complete sequenceAntitoxin of toxin-antitoxin stability system3e-1063.9
NC_012667:931390:965996965996966268273Vibrio cholerae MJ-1236 chromosome 2, complete genomestability protein StbD3e-1063.9
NC_016446:119914:120523120523120792270Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completeantitoxin of toxin-antitoxin stability system3e-1063.9
NC_018645:2390032:240154024015402401791252Desulfobacula toluolica Tol2, complete genomeantitoxin of toxin-antitoxin stability system7e-1062.8
NC_020304:968936:978060978060978311252Desulfocapsa sulfexigens DSM 10523, complete genomeprevent-host-death family protein1e-0961.6
NC_002506:370629:399576399576399824249Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completehypothetical protein5e-0959.7
NC_009456:787322:852832852832853080249Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein5e-0959.7
NC_012580:353273:375268375268375516249Vibrio cholerae M66-2 chromosome II, complete sequenceantitoxin of toxin-antitoxin stability system, StbD family5e-0959.7
NC_012583:361241:410862410862411110249Vibrio cholerae O395 chromosome chromosome II, complete sequenceAntitoxin of toxin-antitoxin stability system, StbD family5e-0959.7
NC_012667:931390:986424986424986672249Vibrio cholerae MJ-1236 chromosome 2, complete genomeDNA for RVC repeated sequence5e-0959.7
NC_016446:49618:100115100115100363249Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completeantitoxin of toxin-antitoxin stability system, StbD family5e-0959.7
NC_016945:370471:399395399395399643249Vibrio cholerae IEC224 chromosome II, complete sequenceantitoxin of toxin-antitoxin stability system, StbD family protein5e-0959.7
NC_012691:3126500:312833331283333128581249Tolumonas auensis DSM 9187, complete genomeprevent-host-death family protein1e-0858.5
NC_014836:1052214:106568310656831065928246Desulfurispirillum indicum S5 chromosome, complete genomeprevent-host-death family protein7e-0855.8
NC_012962:3568046:360445936044593604710252Photorhabdus asymbiotica, complete genomehypothetical protein7e-0752.8
NC_003197:1611302:162683916268391627087249Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein8e-0752.4
NC_011094:1584038:159412715941271594375249Salmonella enterica subsp. enterica serovar Schwarzengrund strstability protein StbD8e-0752.4
NC_016810:1576636:158369215836921583940249Salmonella enterica subsp. enterica serovar Typhimurium strplasmid stability protein8e-0752.4
NC_016856:1621279:163681616368161637064249Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein8e-0752.4
NC_016857:1576636:158369215836921583940249Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein8e-0752.4
NC_016860:1614280:162452916245291624777249Salmonella enterica subsp. enterica serovar Typhimurium strputative stability protein StbD8e-0752.4
NC_016863:1575488:158500715850071585255249Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein8e-0752.4
NC_011149:1578451:158834815883481588596249Salmonella enterica subsp. enterica serovar Agona str. SL483,putative stability protein StbD8e-0752.4