Pre_GI: BLASTP Hits

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Query: NC_012848:320883:341894 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501,

Start: 341894, End: 342628, Length: 735

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013422:2004478:201479020147902015521732Halothiobacillus neapolitanus c2, complete genomecytochrome c oxidase, cbb3-type, subunit II1e-76286
NC_007492:2035761:203883820388382039446609Pseudomonas fluorescens PfO-1, complete genomeCytochrome C oxidase, mono-heme subunit/FixO1e-62239
NC_015422:1163752:117188711718871172519633Alicycliphilus denitrificans K601 chromosome, complete genomecytochrome c oxidase, cbb3-type subunit II1e-61236
NC_014910:3458475:347183434718343472466633Alicycliphilus denitrificans BC chromosome, complete genomecytochrome c oxidase, cbb3-type, subunit ii1e-61236
NC_012560:1965251:198681519868151987423609Azotobacter vinelandii DJ, complete genomecytochrome c oxidase, cbb3-type, subunit II2e-61235
NC_021150:1965264:198682819868281987436609Azotobacter vinelandii CA6, complete genomecytochrome c oxidase, cbb3-type, subunit II2e-61235
NC_011992:1038985:104360910436091044241633Acidovorax ebreus TPSY, complete genomecytochrome c oxidase, cbb3-type, subunit II4e-60231
NC_008782:1136732:114135311413531141985633Acidovorax sp. JS42, complete genomecytochrome c oxidase, cbb3-type, subunit II4e-60231
NC_016745:2229271:223341822334182234026609Oceanimonas sp. GK1 chromosome, complete genomecbb3-type cytochrome c oxidase subunit II4e-60231
NC_005773:3851433:386749938674993868107609Pseudomonas syringae pv. phaseolicola 1448A, complete genomecytochrome c oxidase, cbb3-type, subunit II1e-57223
NC_009092:2282437:229920022992002299805606Shewanella loihica PV-4, complete genomecytochrome c oxidase, cbb3-type, subunit II4e-57221
NC_014541:2122788:213714321371432137754612Ferrimonas balearica DSM 9799 chromosome, complete genomecytochrome c oxidase, cbb3-type, subunit II7e-57220
NC_004578:2185907:218590721859072186515609Pseudomonas syringae pv. tomato str. DC3000, complete genomecytochrome c oxidase, cbb3-type, subunit II3e-56218
NC_008702:1432952:146203614620361462671636Azoarcus sp. BH72, complete genomeprobable cytochrome c oxidase, cbb3-type,subunit II4e-56218
NC_009052:2512373:254857625485762549202627Shewanella baltica OS155, complete genomecytochrome c oxidase, cbb3-type, subunit II1e-55216
NC_007005:4062311:407938740793874079995609Pseudomonas syringae pv. syringae B728a, complete genomeCytochrome C oxidase, mono-heme subunit/FixO6e-55214
NC_009465:29735:412314123141962732Candidatus Vesicomyosocius okutanii HA, complete genomecbb3-type cytochrome c oxidase subunit II4e-55214
NC_009379:435404:447437447437448087651Polynucleobacter sp. QLW-P1DMWA-1, complete genomecytochrome c oxidase, cbb3-type, subunit II4e-53207
NC_007298:778723:785031785031785666636Dechloromonas aromatica RCB, complete genomeCytochrome C oxidase, mono-heme subunit/FixO4e-53207
NC_014934:2223822:2223822222382222260202199Cellulophaga algicola DSM 14237 chromosome, complete genomecytochrome c oxidase, cbb3-type, subunit i7e-52203
NC_010118:133256:1469581469581491682211Candidatus Sulcia muelleri GWSS, complete genomebifunctional cytochrome c oxidase subunits ccoN/O3e-51201
NC_020126:7896447:7918373791837379207332361Myxococcus stipitatus DSM 14675, complete genomebifunctional cbb3-type cytochrome c oxidase subunit I/II2e-49195
NC_008095:6877388:6889429688942968918102382Myxococcus xanthus DK 1622, complete genomecytochrome c oxidase, cbb3-type, subunit I/II7e-49193
NC_009714:1329573:133220013322001332868669Campylobacter hominis ATCC BAA-381, complete genomecbb3-type cytochrome c oxidase subunit II7e-40164
NC_014166:3072703:308225730822573082940684Arcobacter nitrofigilis DSM 7299 chromosome, complete genomecbb3-type cytochrome c oxidase subunit II2e-39162
NC_011146:1429836:143171814317181432578861Geobacter bemidjiensis Bem, complete genomecytochrome c oxidase, cbb3-type, subunit II1e-38159
NC_012856:2266187:226783622678362268459624Ralstonia pickettii 12D chromosome 1, complete genomecytochrome C oxidase mono-heme subunit/FixO5e-24111
NC_006513:1695487:171785717178571718462606Azoarcus sp. EbN1, complete genomecytochrome oxidase, cytochrome c subunit4e-23108
NC_012660:2045398:2065341206534120666301290Pseudomonas fluorescens SBW25 chromosome, complete genomeputative cytochrome C oxidase (monoheme and diheme subunits)6e-23107
NC_015458:1938860:193886019388601939501642Pusillimonas sp. T7-7 chromosome, complete genomecytochrome C oxidase, mono-heme subunit/FixO3e-1995.5
NC_020541:1827689:184740418474041848036633Rhodanobacter sp. 2APBS1, complete genomeCbb3-type cytochrome oxidase, cytochrome c subunit3e-1892
NC_012483:996555:1034387103438710363121926Acidobacterium capsulatum ATCC 51196, complete genomecytochrome C family protein9e-1890.5
NC_012440:373863:375269375269376000732Persephonella marina EX-H1, complete genomecytochrome c oxidase, Cbb3-type, subunit II5e-1684.7