Pre_GI: BLASTP Hits

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Query: NC_012811:1105395:1108154 Methylobacterium extorquens AM1 megaplasmid, complete sequence

Start: 1108154, End: 1112143, Length: 3990

Host Lineage: Methylobacterium extorquens; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: First isolated in 1960 in Oxford, England, as an airborne contaminant growing on methylamine. This strain can grow on methylamine or methanol, but not methane. This organism is capable of growth on one-carbon compounds such as methanol. Methanol is oxidized to formaldehyde which is then used metabolically to generate either energy or biomass. These bacteria are commonly found in the environment, especially associated with plants which produce methanol when metabolizing pectin during cell wall synthesis. At least 25 genes are required for this complex process of converting methanol to formaldehyde and this specialized metabolic pathway is of great interest.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010172:280092:2957902957902997583969Methylobacterium extorquens PA1, complete genomeputative type II DNA modification enzyme01994
NC_008686:1472899:1485429148542914898084380Paracoccus denitrificans PD1222 chromosome 1, complete sequencehypothetical protein01041
NC_012856:2815797:2815797281579728197173921Ralstonia pickettii 12D chromosome 1, complete genomeputative type II DNA modification enzyme01015
NC_015711:3122000:3132062313206231360123951Myxococcus fulvus HW-1 chromosome, complete genometype II DNA modification enzyme0987
NC_015572:3091707:3104253310425331086954443Methylomonas methanica MC09 chromosome, complete genomehypothetical protein0950
NC_006677:1596560:1654143165414316589754833Gluconobacter oxydans 621H, complete genomePutative type II DNA modification enzyme0939
NC_015573:2323268:2323268232326823273084041Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehypothetical protein0843
NC_007333:810381:8465718465718505363966Thermobifida fusca YX, complete genomeputative type II DNA modification enzyme0721
NC_013929:1799594:1808943180894318129744032Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein0692
NC_007645:3934239:3942388394238839466324245Hahella chejuensis KCTC 2396, complete genomeType II restriction enzyme, methylase subunit0684
NC_014151:3663295:3666135366613536701033969Cellulomonas flavigena DSM 20109 chromosome, complete genomeputative type II DNA modification enzyme0683
NC_013595:8603188:8626853862685386309294077Streptosporangium roseum DSM 43021, complete genomeputative type II DNA modification enzyme0673
NC_008697:55406:7324973249772443996Nocardioides sp. JS614 plasmid pNOCA01, complete sequenceputative type II DNA modification enzyme0661
NC_017278:48630:7631176311803093999Thermus sp. CCB_US3_UF1 chromosome, complete genomehypothetical protein0653
NC_013158:1686239:1703027170302717070584032Halorhabdus utahensis DSM 12940, complete genomerestriction/modification enzyme3e-176620
NC_007426:1840670:1871431187143118754594029Natronomonas pharaonis DSM 2160, complete genomeprobable restriction/modification enzyme9e-152538
NC_019968:1147409:1158767115876711629424176Prevotella dentalis DSM 3688 chromosome 2, complete sequencehypothetical protein4e-150533
NC_008639:1462000:1480653148065314845013849Chlorobium phaeobacteroides DSM 266, complete genomehypothetical protein1e-100368
NC_010831:931961:9501289501289540003873Chlorobium phaeobacteroides BS1, complete genomehypothetical protein4e-98360
NC_015510:3543352:3550469355046935551394671Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomehypothetical protein5e-86320
NC_010424:422029:4280804280804328254746Candidatus Desulforudis audaxviator MP104C, complete genomehypothetical protein5e-46187
NC_019792:153661:1605111605111647524242Natronobacterium gregoryi SP2 chromosome, complete genomeN-6 DNA Methylase/Eco57I restriction endonuclease3e-45184
NC_012030:165071:1845441845441886714128Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, completehypothetical protein9e-45183
NC_019974:1115553:1136317113631711405644248Natronococcus occultus SP4, complete genometype I restriction-modification system methyltransferase subunit1e-44182
NC_014820:1517927:1527616152761615315873972Cenarchaeum symbiosum A, complete genometype II restriction enzyme, methylase subunit4e-39164
NC_013441:27877:3596535965399633999Gordonia bronchialis DSM 43247, complete genomehypothetical protein2e-36155
NC_012030:345837:3835923835923868883297Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, completehypothetical protein2e-34149
NC_013132:705314:7134517134517159312481Chitinophaga pinensis DSM 2588, complete genomehypothetical protein4e-31138
NC_005125:2887319:2904118290411829084464329Gloeobacter violaceus PCC 7421, complete genomehypothetical protein1e-29132
NC_015576:808926:8261128261128286612550Mycobacterium sp. JDM601 chromosome, complete genomehypothetical protein4e-27124
NC_019962:2736815:2752702275270227566673966Natrinema pellirubrum DSM 15624, complete genometype I restriction-modification system methyltransferase subunit9e-27123
NC_013440:971717:9717179717179768465130Haliangium ochraceum DSM 14365, complete genomehypothetical protein6e-25117
NC_009921:8215996:8232858823285882369074050Frankia sp. EAN1pec, complete genomeconserved hypothetical protein3e-21105
NC_019792:3219333:3227391322739132312453855Natronobacterium gregoryi SP2 chromosome, complete genomehypothetical protein5e-21104
NC_009076:3564500:3588455358845535928404386Burkholderia pseudomallei 1106a chromosome I, complete sequencehypothetical protein4e-21104
NC_017249:8510121:8510121851012185140593939Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein4e-20101
NC_006350:845513:8818058818058860494245Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein4e-20101
NC_012731:600518:6340556340556380864032Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeATP phosphoribosyltransferase6e-1997.4
NC_013946:415028:4218694218694261494281Meiothermus ruber DSM 1279 chromosome, complete genomehypothetical protein1e-1896.7
NC_009648:5119271:5147740514774051518104071Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeATP phosphoribosyltransferase6e-1894.4
NC_008786:1298817:1303927130392713082854359Verminephrobacter eiseniae EF01-2, complete genomehypothetical protein1e-1793.2
NC_014830:3387479:3405417340541734095024086Intrasporangium calvum DSM 43043 chromosome, complete genomehypothetical protein1e-1792.8
NC_014210:3248526:3256610325661032607014092Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,hypothetical protein4e-1791.3
NC_020126:2979959:3002814300281430067433930Myxococcus stipitatus DSM 14675, complete genomehypothetical protein9e-1790.5
NC_015167:2663686:2672070267207026768244755Cellulophaga lytica DSM 7489 chromosome, complete genomeplasmid-like protein3e-1688.6
NC_018581:2768743:2814836281483628188914056Gordonia sp. KTR9 chromosome, complete genomeType II restriction enzyme, methylase subunits2e-1585.9
NC_014365:2843126:2868884286888428729844101Desulfarculus baarsii DSM 2075 chromosome, complete genomehypothetical protein7e-1584
NC_008782:2326439:2326439232643923289792541Acidovorax sp. JS42, complete genomehypothetical protein2e-1482.4
NC_008278:256427:2599032599032642224320Frankia alni ACN14a, complete genomeconserved hypothetical protein; putative N-6 Adenine-specific DNA methylase domain.1e-1380.1
NC_008146:861319:8923588923588963774020Mycobacterium sp. MCS, complete genomehypothetical protein1e-1379.7
NC_008705:868623:9010879010879051064020Mycobacterium sp. KMS, complete genomeconserved hypothetical protein1e-1379.7
NC_012028:451982:4610004610004648963897Halorubrum lacusprofundi ATCC 49239 chromosome 2, complete genomehypothetical protein6e-1377.8
NC_013235:508585:5085855085855126284044Nakamurella multipartita DSM 44233, complete genomehypothetical protein7e-1377.4
NC_014934:219000:2213082213082245083201Cellulophaga algicola DSM 14237 chromosome, complete genomen-6 DNA methylase8e-1377.4
NC_013521:345308:3562673562673603104044Sanguibacter keddieii DSM 10542, complete genomehypothetical protein1e-1276.6
NC_010554:2646806:2713633271363327186034971Proteus mirabilis HI4320, complete genomeplasmid-related protein3e-1275.5
NC_013530:2492312:2517212251721225213124101Xylanimonas cellulosilytica DSM 15894, complete genomehypothetical protein3e-1275.1
NC_013216:1442044:1450321145032114549944674Desulfotomaculum acetoxidans DSM 771, complete genomehypothetical protein5e-1274.7
NC_013222:1536203:1543931154393115469513021Robiginitalea biformata HTCC2501, complete genometype II restriction enzyme, methylase subunit9e-1273.6
NC_009434:3611738:3728588372858837334954908Pseudomonas stutzeri A1501, complete genometype II restriction enzyme, methylase subunit3e-1172
NC_017243:599814:6074866074866103022817Brachyspira intermedia PWS/A chromosome, complete genomebifunctional endonuclease/methyltransferase3e-1172
NC_019908:21970:4149341493445313039Brachyspira pilosicoli P43/6/78 chromosome, complete genomebifunctional endonuclease/methyltransferase4e-1171.6
NC_018607:805966:8231478231478261793033Brachyspira pilosicoli B2904 chromosome, complete genomebifunctional endonuclease/methyltransferase6e-1171.2
NC_014330:609982:6197376197376224572721Brachyspira pilosicoli 95/1000 chromosome, complete genomefused endonuclease-methyltransferase7e-1170.9
NC_013510:2937530:2948060294806029521004041Thermomonospora curvata DSM 43183, complete genomehypothetical protein6e-1170.9
NC_020388:252500:2734882734882770723585Natronomonas moolapensis 8.8.11 complete genomeprobable restriction/modification enzyme9e-1170.5
NC_018604:2053585:2065813206581320686502838Brachyspira pilosicoli WesB complete genomefused endonuclease-methyltransferase1e-1070.1
NC_006513:148950:1489501489501534854536Azoarcus sp. EbN1, complete genomeN6 adenine-specific DNA methyltransferase1e-1069.7
NC_011880:56543:7357773577778064230Cyanothece sp. PCC 7425 plasmid pP742501, complete sequencehypothetical protein3e-1068.6
NC_019902:2306961:2319086231908623241075022Thioalkalivibrio nitratireducens DSM 14787, complete genomeType II restriction enzyme, methylase subunit4e-1068.2
NC_015578:3371171:3379332337933233821872856Treponema primitia ZAS-2 chromosome, complete genomehypothetical protein7e-1067.4
NC_013929:2375613:2419372241937224248975526Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein7e-0963.9
NC_013757:3897413:3918472391847239231994728Geodermatophilus obscurus DSM 43160, complete genomehypothetical protein8e-0963.9
NC_013008:5382917:5406351540635154112854935Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein8e-0963.9
NC_011353:5426793:5450290545029054552244935Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein8e-0963.9
NC_013941:5192500:5214907521490752198414935Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-0863.5
NC_013926:1270173:1273330127333012763172988Aciduliprofundum boonei T469 chromosome, complete genomeprotein of unknown function DUF4502e-0862.8
NC_015500:2866027:2901708290170829050823375Treponema brennaborense DSM 12168 chromosome, complete genometype IIS restriction endonuclease, putative4e-0861.6
NC_009142:5698100:5724174572417457278303657Saccharopolyspora erythraea NRRL 2338, complete genomeDNA methylase7e-0860.8
NC_014659:1731121:1742631174263117472204590Rhodococcus equi 103S, complete genomehypothetical protein7e-0860.8
NC_013929:7278414:7288198728819872933725175Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-0760.5
NC_012225:1497934:1516857151685715198923036Brachyspira hyodysenteriae WA1, complete genomerestriction enzyme methylase subunit9e-0860.5
NC_015576:612164:6209636209636255584596Mycobacterium sp. JDM601 chromosome, complete genomeputative type II restriction enzyme methylase subunit2e-0759.7
NC_014150:2146887:2150714215071421538903177Brachyspira murdochii DSM 12563 chromosome, complete genomeprotein of unknown function DUF4502e-0759.3
NC_017378:1489818:1499346149934615029123567Helicobacter pylori Puno120 chromosome, complete genometype II S restriction-modification protein9e-0757
NC_009338:3359500:3396675339667534002443570Mycobacterium gilvum PYR-GCK chromosome, complete genomeDNA methylase2e-0656.2
NC_017093:6461486:6467914646791464728604947Actinoplanes missouriensis 431, complete genomehypothetical protein2e-0656.2
NC_007333:1129826:1137502113750211411703669Thermobifida fusca YX, complete genomeputative DNA methylase2e-0655.8
NC_009051:1118486:1143895114389511470053111Methanoculleus marisnigri JR1, complete genomeprotein of unknown function DUF4503e-0655.5
NC_013441:382597:3854153854153901364722Gordonia bronchialis DSM 43247, complete genometype II restriction enzyme, methylase subunit3e-0655.1
NC_018679:1738126:1742905174290517478664962Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completeplasmid-like protein4e-0655.1