Pre_GI: BLASTP Hits

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Query: NC_012125:326909:334900 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 334900, End: 335142, Length: 243

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:326517:335030335030335344315Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein3e-41166
NC_011205:329155:344014344014344256243Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein4e-40162
NC_006511:2540500:256570325657032566017315Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-32138
NC_003198:331314:339851339851340156306Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein4e-30129
NC_016832:2612809:263792926379292638162234Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein5e-30129
NC_011094:334267:341337341337341516180Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein5e-27119
NC_016860:332087:340455340455340646192Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein4e-24110
NC_017046:329847:339930339930340121192Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein4e-24110
NC_016863:332060:340428340428340676249Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein3e-24110
NC_011080:333121:344281344281344457177Salmonella enterica subsp. enterica serovar Newport str. SL254,4e-24109
NC_015968:511282:528718528718529191474Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein1e-23108
NC_014121:677799:696780696780697235456Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein3e-23107
NC_016514:506611:530199530199530657459Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein2e-23107
NC_011205:329155:337601337601337810210Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein4e-21100
NC_015663:1869000:190067619006761900858183Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein4e-1270.1
NC_016857:329849:339932339932340045114Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein4e-1167
NC_011149:309556:321823321823321936114Salmonella enterica subsp. enterica serovar Agona str. SL483,4e-1167
NC_013592:2160000:217890621789062179175270Dickeya dadantii Ech586, complete genomehypothetical protein3e-1063.9
NC_012912:2285778:230357823035782303790213Dickeya zeae Ech1591, complete genomeDomain of unknown function DUF1813 HSP20-like protein6e-1062.8
NC_012912:2174183:219338421933842193671288Dickeya zeae Ech1591, complete genomeDomain of unknown function DUF1813 HSP20-like protein2e-0961.6
NC_013592:2160000:217623521762352176441207Dickeya dadantii Ech586, complete genomeDomain of unknown function DUF1813 HSP20-like protein3e-0960.5
NC_013716:3109700:312146731214673121664198Citrobacter rodentium ICC168, complete genomehypothetical protein7e-0856.2
NC_016860:332087:34039034039034048293Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-0753.5
NC_004547:3817656:382111538211153821444330Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein5e-0753.1
NC_004547:3817656:382804538280453828374330Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein5e-0753.1