Pre_GI: BLASTP Hits

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Query: NC_012125:1360593:1372984 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1372984, End: 1373103, Length: 120

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007946:2593500:2597497259749725986901194Escherichia coli UTI89, complete genomepossible prophage integrase3e-1063.5
NC_012759:2342986:2350372235037223515291158Escherichia coli BW2952 chromosome, complete genomeCPS-53 (KpLE1) prophage; putative prophage CPS-53 integrase5e-1063.2
NC_011742:2489000:2493355249335524945121158Escherichia coli S88 chromosome, complete genomeprophage CPS-53 integrase; CPS-53 (KpLE1) prophage5e-1063.2
AC_000091:2462461:2471991247199124731481158Escherichia coli W3110 DNA, complete genomepredicted prophage CPS-53 integrase5e-1063.2
NC_008563:2565876:2570223257022325713801158Escherichia coli APEC O1, complete genomeputative phage integrase5e-1063.2
NC_010473:2548946:2556332255633225574891158Escherichia coli str. K-12 substr. DH10B, complete genomeCPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase5e-1063.2
NC_000913:2455037:2464567246456724657241158Escherichia coli K12, complete genomeCPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase5e-1063.2
CP002516:1475521:1486408148640814875651158Escherichia coli KO11, complete genomeintegrase family protein9e-1062.4
CP002185:2608000:2618292261829226194491158Escherichia coli W, complete genomepredicted prophage integrase9e-1062.4
NC_016902:1475521:1486408148640814875651158Escherichia coli KO11FL chromosome, complete genomeintegrase family protein9e-1062.4
NC_011750:2585015:2588734258873425898911158Escherichia coli IAI39 chromosome, complete genomeputative prophage CPS-53 integrase; CPS-53 (KpLE1) prophage8e-1062.4
NC_013361:3254000:3264365326436532655221158Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase8e-1062.4
NC_011353:3276734:3297224329722432984171194Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeintegrase3e-0960.5
NC_002655:3260500:3263064326306432642571194Escherichia coli O157:H7 EDL933, complete genomeputative prophage integrase3e-0960.5
NC_013008:3231414:3252131325213132532881158Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeCPS-53 (KpLE1) prophage; prophage CPS-53 integrase5e-0959.7
NC_002695:3189425:3193144319314431943011158Escherichia coli O157:H7 str. Sakai, complete genomeputative prophage Sf6-like integrase5e-0959.7
CU928145:2655989:2665518266551826666751158Escherichia coli 55989 chromosome, complete genomeputative prophage CPS-53 integrase; CPS-53 (KpLE1) prophage2e-0858.2
NC_011748:2655989:2665518266551826666751158Escherichia coli 55989, complete genomeputative prophage CPS-53 integrase; CPS-53 (KpLE1) prophage2e-0858.2
NC_013941:2928000:2934174293417429353671194Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeprophage integrase3e-0857
NC_014306:3524980:3531569353156935327261158Erwinia billingiae Eb661, complete genomeIntegrase2e-0754.7
NC_010551:2007926:201694420169442017801858Burkholderia ambifaria MC40-6 chromosome 1, complete sequenceintegrase family protein1e-0652
NC_008390:2018201:2024037202403720252811245Burkholderia cepacia AMMD chromosome 1, complete sequencephage integrase family protein2e-0651.6
NC_013508:2587913:2594426259442625955831158Edwardsiella tarda EIB202, complete genomeputative prophage Sf6-like integrase4e-0650.1