Pre_GI: BLASTP Hits

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Query: NC_012125:1360593:1364588 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1364588, End: 1365043, Length: 456

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:401154:403214403214403669456Salmonella enterica subsp. enterica serovar Choleraesuis strVG14_BPP22 (Q01075) Protein gp141e-86318
NC_011205:645591:647714647714648169456Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein8e-86315
NC_016860:397138:399721399721400176456Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-85313
NC_010067:2529750:256868825686882569143456Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-85313
NC_013364:2612822:262749226274922627947456Escherichia coli O111:H- str. 11128, complete genomeputative head assembly protein1e-84311
NC_011742:2489000:250681225068122507267456Escherichia coli S88 chromosome, complete genomehead assembly protein3e-84310
NC_008563:2565876:258371525837152584170456Escherichia coli APEC O1, complete genomehead assembly protein3e-84310
NC_007946:2593500:261048926104892610944456Escherichia coli UTI89, complete genomehead assembly protein3e-84310
CP002185:2608000:262761526276152628070456Escherichia coli W, complete genomehypothetical protein9e-84308
CP002516:1475521:147778714777871478242456Escherichia coli KO11, complete genomeputative head assembly protein9e-84308
NC_016902:1475521:147778714777871478242456Escherichia coli KO11FL chromosome, complete genomeputative head assembly protein9e-84308
CU928145:2655989:267867326786732679131459Escherichia coli 55989 chromosome, complete genomeHead assembly protein1e-83307
NC_011748:2655989:267867326786732679131459Escherichia coli 55989, complete genomeHead assembly protein1e-83307
NC_017328:335160:337426337426337881456Shigella flexneri 2002017 chromosome, complete genomeGene 10 protein2e-83307
NC_009800:320115:321068321068321523456Escherichia coli HS, complete genomehypothetical protein2e-83307
NC_013361:3254000:327401732740173274472456Escherichia coli O26:H11 str. 11368 chromosome, complete genomehead assembly protein3e-83306
NC_011083:403022:405187405187405600414Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein2e-75280