Pre_GI: BLASTP Hits

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Query: NC_011958:1121387:1145017 Rhodobacter sphaeroides KD131 chromosome 2, complete genome

Start: 1145017, End: 1145514, Length: 498

Host Lineage: Rhodobacter sphaeroides; Rhodobacter; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Bacteria belonging to the Rhodobacter group are metabolically versatile as they are able to grow using photosynthesis, chemosynthesis, and usually can grow under both anaerobic and aerobic conditions. The most extensively studied bacteria with regards to its photosynthetic capabilities which includes the structure, function and regulation of its photosynthetic membranes, its mechanisms of CO2 and nitrogen fixation, cytochrome diversity and its electron transport systems. It can grow aerobically and anaerobically in the light and anaerobically in the dark. It produces an intracytoplasmic membrane system consisting of membrane invaginations where the light harvesting complexes (LH1 and LH2) and the reaction center are synthesized. Furthermore, it has the ability to detoxify metal oxides and oxyanions and hence has a role in bioremediation.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009040:43791:618926189262389498Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, completeRNA polymerase, sigma-24 subunit, ECF subfamily5e-65246
NC_008686:1592073:161056416105641611091528Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily6e-28123
NC_010676:61098:808068080681477672Burkholderia phytofirmans PsJN chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily3e-1064.7
NC_016112:1735044:174948717494871749993507Methylomicrobium alcaliphilum chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-0858.9
NC_004757:2657490:265749026574902658047558Nitrosomonas europaea ATCC 19718, complete genomeProbable fecI Specialized sigma subunits of RNA polymerase1e-0858.9
NC_007005:2191500:221606422160642216600537Pseudomonas syringae pv. syringae B728a, complete genomeRNA polymerase sigma-70 factor5e-0857
NC_018691:318662:319603319603320118516Alcanivorax dieselolei B5 chromosome, complete genomeRNA polymerase sigma-70 factor, ECF subfamily4e-0753.9
NC_016830:2168523:218617921861792186661483Pseudomonas fluorescens F113 chromosome, complete genomeprotein FpvI4e-0753.9
NC_014375:1146328:117242311724231172977555Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0652.8
NC_015572:427732:454649454649455155507Methylomonas methanica MC09 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-0652
NC_016822:4889656:489396448939644894485522Shigella sonnei 53G, complete genomeRNA polymerase sigma factor FecI3e-0651.2
NC_012759:4433500:445447244544724454993522Escherichia coli BW2952 chromosome, complete genomeRNA polymerase sigma factor FecI3e-0651.2
NC_010473:4596500:461754546175454618066522Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; RNA polymerase, sigma 19 factor3e-0651.2
AC_000091:4501430:452239445223944522915522Escherichia coli W3110 DNA, complete genomeRNA polymerase, sigma 19 factor3e-0651.2
NC_015563:4093650:409834140983414098964624Delftia sp. Cs1-4 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor3e-0651.2
NC_012560:201237:217624217624218127504Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma factor, FecI family3e-0651.2
NC_021150:201237:217624217624218127504Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor, FecI family3e-0651.2
NC_007974:934000:953531953531954031501Ralstonia metallidurans CH34 chromosome 2, complete sequencesigma-24 (FecI-like)1e-0549.3
NC_015410:1324313:133080213308021331320519Pseudomonas mendocina NK-01 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor1e-0549.3