Pre_GI: BLASTP Hits

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Query: NC_011333:1236730:1236730 Helicobacter pylori G27 chromosome, complete genome

Start: 1236730, End: 1237881, Length: 1152

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: Helicobacter pylori is a gram-negative pathogen that colonizes the stomachs of over half the world's population. Originally isolated from an endoscopy patient from Grosseto Hospital (Tuscany, Italy). Causes peptic ulcers. This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017379:1233482:1239138123913812402891152Helicobacter pylori Puno135 chromosome, complete genomeNa+/H+ antiporter0706
NC_017378:1175639:1181291118129111824421152Helicobacter pylori Puno120 chromosome, complete genomeNa+/H+ antiporter0704
NC_017192:683493:6894406894406905971158Arcobacter sp. L, complete genomesodium-hydrogen antiporter1e-63244
NC_017281:1645903:1644747164474716459221176Campylobacter jejuni subsp. jejuni S3 chromosome, complete genomeNA+/H+ antiporter (napA), putative4e-63242
NC_003912:1742370:1741214174121417423891176Campylobacter jejuni RM1221, complete genomesodium/hydrogen exchanger family protein4e-63242
NC_017279:1603916:1602760160276016039351176Campylobacter jejuni subsp. jejuni IA3902 chromosome, completeputative transmembrane transport protein2e-62240
NC_009850:566755:5688475688475700041158Arcobacter butzleri RM4018, complete genomeprobable sodium/hydrogen antiporter1e-58227
NC_014166:2959688:2982393298239329835501158Arcobacter nitrofigilis DSM 7299 chromosome, complete genomesodium/hydrogen exchanger3e-58226
NC_015697:116000:1179191179191197781860Lactobacillus reuteri SD2112 chromosome, complete genomeCPA2 family monovalent cation:proton (H+) antiporter-29e-22104
NC_013199:1966334:1987394198739419892231830Lactobacillus rhamnosus Lc 705, complete genomeKef-type K transport system, membrane component3e-1893.2
NC_016148:463840:4819894819894838841896Thermovirga lienii DSM 17291 chromosome, complete genometransporter, CPA2 family (TC 2.A.37)3e-1066.2
NC_016787:733685:7376917376917388901200Corynebacterium diphtheriae HC03 chromosome, complete genomeNa+/H+ antiporter-like protein2e-0860.5
NC_003888:3602753:3622590362259036238041215Streptomyces coelicolor A3(2), complete genomeintegral membrane efflux protein4e-0859.3
NC_016786:720000:7240977240977252961200Corynebacterium diphtheriae HC01 chromosome, complete genomeNa+/H+ antiporter-like protein5e-0859.3
NC_016782:720000:7241287241287253271200Corynebacterium diphtheriae 241 chromosome, complete genomeNa+/H+ antiporter-like protein5e-0859.3
NC_013926:829665:8308168308168324081593Aciduliprofundum boonei T469 chromosome, complete genomesodium/hydrogen exchanger9e-0858.2
NC_015847:909938:9271419271419283041164Methanococcus maripaludis XI chromosome, complete genomeNa+/H+ exchanger1e-0758.2
NC_009975:1682000:1683608168360816847741167Methanococcus maripaludis C6, complete genomesodium/hydrogen exchanger2e-0653.9
NC_008541:2119883:2122946212294621241301185Arthrobacter sp. FB24 chromosome 1, complete sequencesodium/hydrogen exchanger6e-0652