Pre_GI: BLASTP Hits

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Query: NC_011149:2701916:2711244 Salmonella enterica subsp. enterica serovar Agona str. SL483,

Start: 2711244, End: 2711363, Length: 120

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella enterica subsp. enterica serovar Agona causes gastroenteritis in humans and is also pathogenic to swine and other food animals. This serovar is able to contain the Salmonella genomic island 1 multidrug resistance gene cluster. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:3364448:3373591337359133764972907Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC23S ribosomal RNA4e-1786.7
CU928160:4248621:4257786425778642606892904Escherichia coli IAI1 chromosome, complete genomeribosomal RNA 23S5e-1786.3
NC_010473:4256000:4266361426636142692642904Escherichia coli str. K-12 substr. DH10B, complete genome23S ribosomal RNA6e-1786.3
NC_000913:4159090:4166664416666441695672904Escherichia coli K12, complete genome23S ribosomal RNA6e-1786.3
CU928160:2785792:2793337279333727962402904Escherichia coli IAI1 chromosome, complete genomeribosomal RNA 23S6e-1786.3
CP002516:1196000:1205753120575312086532901Escherichia coli KO11, complete genome23S ribosomal RNA6e-1785.9
CP002797:4812799:4820166482016648230732908Escherichia coli NA114, complete genome23S ribosomal RNA2e-1684.3
NC_003198:2703013:2712478271247827154833006Salmonella enterica subsp. enterica serovar Typhi str. CT18,6e-1682.8
NC_003198:3586000:3595006359500635980113006Salmonella enterica subsp. enterica serovar Typhi str. CT18,6e-1682.8
NC_012779:610509:626406626406626525120Edwardsiella ictaluri 93-146, complete genomehypothetical protein3e-1270.5
NC_008610:1068429:1077544107754410801732630Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),23S ribosomal RNA7e-1165.9
NC_014109:326500:3341223341223370032882Candidatus Riesia pediculicola USDA chromosome, complete genome23S ribosomal RNA1e-1064.7
NC_014109:27500:3542835428383092882Candidatus Riesia pediculicola USDA chromosome, complete genome23S ribosomal RNA1e-1064.7
NC_014752:23601:3345033450360612612Neisseria lactamica ST-640, complete genome23S ribosomal RNA2e-1064.7
NC_014752:617987:6288866288866314972612Neisseria lactamica ST-640, complete genome23S ribosomal RNA2e-1064.7
NC_014752:324832:3326323326323352432612Neisseria lactamica ST-640, complete genome23S ribosomal RNA2e-1064.7
NC_009465:938378:9446559446559475602906Candidatus Vesicomyosocius okutanii HA, complete genome23S ribosomal RNA9e-1062.4