Pre_GI: BLASTP Hits

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Query: NC_011094:638552:669807 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 669807, End: 670013, Length: 207

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016831:1734292:173784117378411738047207Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein5e-1682.8
NC_011205:1345511:137557113755711375777207Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein5e-1682.8
NC_013361:2138716:214219621421962142408213Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein1e-0962.4
NC_011742:4962008:497705849770584977276219Escherichia coli S88 chromosome, complete genomehypothetical protein1e-0962
NC_011748:1773642:177753217775321777750219Escherichia coli 55989, complete genomeconserved hypothetical protein from putative prophage1e-0962
NC_011740:4520373:453452645345264534744219Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein from putative prophage1e-0962
NC_011751:1859606:186308618630861863304219Escherichia coli UMN026 chromosome, complete genomehypothetical protein1e-0962
CU928145:1773642:177753217775321777750219Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein from putative prophage1e-0962
NC_016612:3314846:334213733421373342352216Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein2e-0961.2
NC_017047:1906000:192323619232361923454219Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein6e-0959.7
NC_011353:1761977:176197717619771762189213Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein7e-0959.3
NC_014121:1682638:170325917032591703474216Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-0858.5
NC_017060:59500:882878828788505219Rahnella aquatilis HX2 plasmid PRA1, complete sequencehypothetical protein1e-0858.5
NC_011353:2892265:291006329100632910275213Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein4e-0857
NC_002695:2893951:291587829158782916114237Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein5e-0856.6
NC_016613:2160356:217250021725002172712213Vibrio sp. EJY3 chromosome 1, complete sequencehypothetical protein4e-0650.4