Pre_GI: BLASTP Hits

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Query: NC_011094:2791719:2816150 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 2816150, End: 2818162, Length: 2013

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016514:891772:9045959045959066132019Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein0955
NC_004547:1174650:1183908118390811859172010Erwinia carotovora subsp. atroseptica SCRI1043, complete genomephage-related hypothetical protein8e-124444
NC_010694:2492378:2500860250086025028692010Erwinia tasmaniensis, complete genomeProbable RNA-directed DNA polymerase (Reverse transcriptase)1e-121437
NC_009801:3013838:3028075302807530300932019Escherichia coli E24377A, complete genomehypothetical protein4e-119429
NC_020063:1051310:1062071106207110640231953Enterobacteriaceae bacterium strain FGI 57, complete genomeReverse transcriptase (RNA-dependent DNA polymerase)3e-83310
NC_009667:1371924:1381448138144813834692022Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequencehypothetical protein2e-65251
NC_015968:74124:8289082890848451956Enterobacter asburiae LF7a chromosome, complete genomeputative DNA-binding protein3e-56220
NC_008800:1300500:1311562131156213135682007Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative DNA-binding protein8e-56219
NC_016602:2854107:2863424286342428654632040Vibrio furnissii NCTC 11218 chromosome 1, complete sequencephage-related hypothetical protein6e-55216
NC_014500:564864:5885285885285905702043Dickeya dadantii 3937 chromosome, complete genomephage abortive infection protein1e-53211
NC_006350:595893:6440906440906461622073Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein5e-45182
NC_020911:1859210:1871263187126318731971935Octadecabacter antarcticus 307, complete genomehypothetical protein1e-44182
NC_017098:1149145:1170484117048411726102127Spirochaeta africana DSM 8902 chromosome, complete genomereverse transcriptase9e-43175
NC_008209:2367500:2373866237386623758031938Roseobacter denitrificans OCh 114, complete genomehypothetical protein5e-39163
NC_014171:261952:2619522619522638651914Bacillus thuringiensis BMB171 chromosome, complete genomehypothetical protein6e-22106
NC_012580:301500:3349373349373365021566Vibrio cholerae M66-2 chromosome II, complete sequencehypothetical protein9e-1582.8
NC_017365:1466500:147128514712851472205921Helicobacter pylori F30, complete genomehypothetical protein6e-1479.7
NC_017378:1489818:1497185149718514988041620Helicobacter pylori Puno120 chromosome, complete genomehypothetical protein2e-1378.6
NC_009092:1684467:1693317169331716949481632Shewanella loihica PV-4, complete genomehypothetical protein6e-1376.6
NC_013889:2603914:2611990261199026134861497Thioalkalivibrio sp. K90mix chromosome, complete genomehypothetical protein9e-1375.9
NC_019908:21970:4453144531461621632Brachyspira pilosicoli P43/6/78 chromosome, complete genomehypothetical protein3e-1274.3
NC_013889:1740858:1750200175020017514231224Thioalkalivibrio sp. K90mix chromosome, complete genome6e-1273.2
NC_008253:2828573:2839884283988428412541371Escherichia coli 536, complete genomehypothetical protein1e-1172
NC_014644:1275038:1281340128134012828691530Gardnerella vaginalis ATCC 14019 chromosome, complete genomehypothetical protein2e-1171.6
NC_015508:296856:3063403063403080791740Agrobacterium sp. H13-3 chromosome linear, complete sequencehypothetical protein8e-1169.7
NC_009667:1203861:1216524121652412181971674Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequencehypothetical protein3e-1067.4
NC_015410:2258800:2268392226839222700411650Pseudomonas mendocina NK-01 chromosome, complete genomehypothetical protein6e-1066.6
NC_014761:1795304:1805102180510218069251824Oceanithermus profundus DSM 14977 chromosome, complete genomehypothetical protein1e-0965.5
NC_015510:2209663:2220794222079422225811788Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomehypothetical protein5e-0963.5
NC_011662:2320100:2360274236027423618751602Thauera sp. MZ1T, complete genomehypothetical protein1e-0862.4
NC_002939:579087:5846235846235861611539Geobacter sulfurreducens PCA, complete genomehypothetical protein3e-0757.4