Pre_GI: BLASTP Hits

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Query: NC_011094:1923870:1943982 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 1943982, End: 1944269, Length: 288

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011205:1391971:140140014014001401687288Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853lytic enzyme1e-39161
NC_016860:1943203:196163519616351961865231Salmonella enterica subsp. enterica serovar Typhimurium strlytic enzyme1e-33141
NC_016810:1903426:192366219236621923892231Salmonella enterica subsp. enterica serovar Typhimurium str1e-33141
NC_010102:1137247:115165111516511151881231Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-33141
NC_003197:1945858:196609419660941966381288Salmonella typhimurium LT2, complete genomehypothetical protein3e-33140
NC_016856:1957263:197749919774991977786288Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein3e-33140
NC_016857:1903426:192366219236621923949288Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74lytic enzyme3e-33140
NC_016863:1905454:192569019256901925977288Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein3e-33140
NC_015761:1017301:102522610252261025840615Salmonella bongori NCTC 12419, complete genomebacteriophage protein8e-33138
NC_011094:638552:664550664550665164615Salmonella enterica subsp. enterica serovar Schwarzengrund strlytic enzyme2e-32137
NC_020181:5217000:522775752277575228383627Enterobacter aerogenes EA1509E, complete genomehypothetical protein9e-2199
NC_010067:2304313:232964023296402329939300Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein5e-1992.8
NC_015663:4522109:452715045271504527779630Enterobacter aerogenes KCTC 2190 chromosome, complete genomelytic enzyme6e-1992.8
NC_012731:2083650:211163421116342112260627Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative glycoside hydrolase2e-1891.3
NC_020181:5384015:539721353972135397842630Enterobacter aerogenes EA1509E, complete genomePhage endolysin3e-1890.1
NC_013282:1804909:182501118250111825565555Cronobacter turicensis, complete genomehypothetical protein1e-1788.6
NC_009648:1541699:156536715653671565993627Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative glycoside hydrolase5e-1786.3
NC_013850:2182337:220954522095452210171627Klebsiella variicola At-22 chromosome, complete genomeglycoside hydrolase family 195e-1786.3
NC_014121:1682638:169633316963331696881549Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completelytic enzyme2e-1684.7
NC_011601:2806392:281283928128392813465627Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeendolysin2e-1684.7
NC_016612:3314846:333598533359853336533549Klebsiella oxytoca KCTC 1686 chromosome, complete genomelytic enzyme4e-1683.2
NC_012214:1974500:198840819884081989031624Erwinia pyrifoliae Ep1/96, complete genomeLytic enzyme2e-1477.4
NC_012660:4558122:457641545764154576948534Pseudomonas fluorescens SBW25 chromosome, complete genomeputative phage encoded lysozyme9e-0958.9
NC_017047:1906000:191830019183001918926627Rahnella aquatilis HX2 chromosome, complete genomeputative endolysin9e-0958.9
NC_004578:4432983:444604244460424446575534Pseudomonas syringae pv. tomato str. DC3000, complete genomelysozyme, putative5e-0856.2
NC_004578:3817330:383103838310383831583546Pseudomonas syringae pv. tomato str. DC3000, complete genomelysozyme, putative2e-0754.3
NC_005773:2177184:218310721831072183652546Pseudomonas syringae pv. phaseolicola 1448A, complete genomeprophage PSPPH02, putative chitinase9e-0752.4
NC_013282:1200993:122515912251591225785627Cronobacter turicensis, complete genomeUncharacterized protein HI14153e-0650.4