Pre_GI: BLASTP Hits

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Query: NC_011092:76993:77471 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 77471, End: 78964, Length: 1494

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world.This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017387:247462:2902192902192917121494Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeputative transposase01025
NC_017171:280762:2881962881962896891494Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeputative transposase01025
NC_017162:270460:2788872788872803801494Acinetobacter baumannii 1656-2 chromosome, complete genomePutative transposase01025
NC_016445:89500:9552295522970151494Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetransposase InsA01025
NC_012668:3037345:3052570305257030540631494Vibrio cholerae MJ-1236 chromosome 1, complete sequenceIS phage Tn transposon-related protein01025
NC_004741:2593012:2600230260023026017231494Shigella flexneri 2a str. 2457T, complete genomeputative transposase01025
NC_009651:19909:1990919909210961188Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5,putative transposase0810
NC_009651:19909:3212932129336701542Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5,hypothetical protein0663
NC_010410:3606826:3652779365277936543201542Acinetobacter baumannii AYE, complete genomeputative transposase0663
NC_009838:81913:1008861008861024151530Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequencetransposase1e-153543
NC_009140:121107:1303701303701318991530Salmonella enterica enterica sv Newport str. SL254, completetransposase InsE1e-153543
NC_016445:89500:9980699806100345540Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein5e-76285
NC_010170:1551923:1562792156279215643391548Bordetella petrii, complete genomeputative transposase1e-57224
NC_008712:215499:2366702366702382171548Arthrobacter aurescens TC1 plasmid TC1, complete sequenceISPps1, transposase3e-57223
NC_003384:157158:1629211629211641251205Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid2e-50200
NC_011751:4992500:500637950063795006792414Escherichia coli UMN026 chromosome, complete genome2e-49197
NC_013365:92973:113049113049113450402Escherichia coli O111:H- str. 11128 plasmid pO111_1, completehypothetical protein4e-49196
NC_014315:2659479:267074326707432671168426Nitrosococcus watsoni C-113 chromosome, complete genomeIS phage Tn transposon-like protein4e-27123
NC_017030:3608000:362230636223063622725420Corallococcus coralloides DSM 2259 chromosome, complete genomehypothetical protein2e-24114
NC_014623:2962330:297415729741572974540384Stigmatella aurantiaca DW4/3-1 chromosome, complete genometransposase2e-1790.9
NC_010170:1551923:1570186157018615722372052Bordetella petrii, complete genometransposition-related fusion-protein3e-1790.1
NC_008712:215499:2288682288682307511884Arthrobacter aurescens TC1 plasmid TC1, complete sequence4e-1789.7
NC_015732:982774:1000886100088610021061221Spirochaeta caldaria DSM 7334 chromosome, complete genomehypothetical protein4e-1480.1
NC_014623:3029853:305309730530973053714618Stigmatella aurantiaca DW4/3-1 chromosome, complete genometransposase-like protein1e-1378.2
NC_019897:209523:2161202161202173671248Thermobacillus composti KWC4 chromosome, complete genometransposase1e-1171.6
NC_010424:214640:223810223810224022213Candidatus Desulforudis audaxviator MP104C, complete genome1e-0758.5