Pre_GI: BLASTP Hits

Some Help

Query: NC_011080:1321268:1329979 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1329979, End: 1330767, Length: 789

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:2531817:254536125453612546149789Salmonella enterica subsp. enterica serovar Paratyphi C strainenvelope lipoprotein3e-140497
NC_006905:1342474:135982313598231360611789Salmonella enterica subsp. enterica serovar Choleraesuis strputative envelope lipoprotein3e-140497
NC_010102:1779707:179324917932491794037789Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-140497
NC_011083:1323827:133323213332321334020789Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,EnvF2e-139494
NC_016860:1317174:132587613258761326664789Salmonella enterica subsp. enterica serovar Typhimurium strputative envelope lipoprotein8e-139492
NC_003197:1320861:132818913281891328977789Salmonella typhimurium LT2, complete genomeputative envelope lipoprotein8e-139492
NC_016857:1276340:128504212850421285914873Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74EnvF5e-138490
NC_011149:1870931:188448618844861885274789Salmonella enterica subsp. enterica serovar Agona str. SL483,EnvF4e-138490
NC_017046:1277787:128511512851151285903789Salmonella enterica subsp. enterica serovar Typhimurium str. 798lipoprotein6e-138489
NC_016863:1277652:128635412863541287142789Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative envelope lipoprotein6e-138489
NC_016856:1326503:133816413381641338952789Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative envelope lipoprotein6e-138489
NC_016810:1276340:128504212850421285830789Salmonella enterica subsp. enterica serovar Typhimurium strlipoprotein6e-138489
NC_016831:1083871:109130310913031092010708Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-120431
NC_011205:2024458:203800220380022038682681Salmonella enterica subsp. enterica serovar Dublin str. CT_020218539e-119426