Pre_GI: BLASTP Hits

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Query: NC_010660:175200:190710 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 190710, End: 190916, Length: 207

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017319:192482:207702207702207911210Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceputative regulator2e-32137
NC_007608:97092:110679110679110888210Shigella boydii Sb227 plasmid pSB4_227, complete sequenceputative regulator2e-32137
NC_011749:34056:533085330853517210Escherichia coli UMN026 plasmid p1ESCUM, complete sequencehemolysin expression-modulating protein hmo1e-31135
NC_007607:87000:104623104623104811189Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceputative regulator2e-1994.4
NC_013716:5201097:523261552326155232827213Citrobacter rodentium ICC168, complete genomeputative haemolysin expression regulatory protein4e-1787
NC_015663:1869000:188221118822111882414204Enterobacter aerogenes KCTC 2190 chromosome, complete genomegene expression modulator4e-1683.6
NC_012880:1127997:115129411512941151497204Dickeya dadantii Ech703, complete genomeHemolysin expression modulating family protein2e-1581.3
NC_015566:1127595:115178011517801151983204Serratia sp. AS12 chromosome, complete genomehemolysin expression modulating family protein3e-1580.1
NC_015567:1127780:115196511519651152168204Serratia sp. AS9 chromosome, complete genomehemolysin expression modulating family protein3e-1580.1
NC_004344:589375:607573607573607776204Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein5e-1579.7
NC_004431:3409389:348569434856943485918225Escherichia coli CFT073, complete genomeHaemolysin expression modulating protein2e-1477.8
NC_016893:218376:224256224256224459204Wigglesworthia glossinidia endosymbiont of Glossina morsitanshemolysin expression modulating protein2e-1477.8
NC_007713:1:228222822494213Sodalis glossinidius str. 'morsitans' plasmid pSG1, completeputative regulatory protein2e-1064.3
NC_011751:3453683:350879835087983508938141Escherichia coli UMN026 chromosome, complete genome2e-0858.2
NC_004431:279868:285015285015285155141Escherichia coli CFT073, complete genomeHaemolysin expression modulating protein2e-0858.2
NC_015566:3269469:327287432728743273089216Serratia sp. AS12 chromosome, complete genomehemolysin expression modulating family protein6e-0753.1