Pre_GI: BLASTP Hits

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Query: NC_010572:6463939:6471314 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 6471314, End: 6471676, Length: 363

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021177:1736854:176822117682211768559339Streptomyces fulvissimus DSM 40593, complete genomeChorismate mutase1e-52204
NC_016114:5539021:554730755473075547630324Streptomyces flavogriseus ATCC 33331 chromosome, complete genomechorismate mutase3e-45179
NC_003155:7453994:745918874591887459577390Streptomyces avermitilis MA-4680, complete genomechorismate mutase4e-43173
NC_018750:1835500:184486018448601845174315Streptomyces venezuelae ATCC 10712, complete genomeChorismate mutase I2e-41167
NC_013929:7606749:761466376146637615097435Streptomyces scabiei 87.22 chromosome, complete genomechorismate mutase2e-40164
NC_015957:8103472:811947581194758119828354Streptomyces violaceusniger Tu 4113 chromosome, complete genomechorismate mutase1e-38158
NC_010407:2406113:241973624197362420119384Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative chorismate mutase2e-30130
NC_013715:699400:704904704904705356453Rothia mucilaginosa DY-18, complete genomechorismate mutase2e-29127
NC_003911:3453764:345376434537643454060297Silicibacter pomeroyi DSS-3, complete genomechorismate mutase6e-23105
NC_015573:2323268:2345906234590623471711266Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomePrephenate dehydratase6e-1372.8
NC_012913:626449:6504936504936516171125Aggregatibacter aphrophilus NJ8700, complete genomechorismate mutase/prephenate dehydrogenase2e-0650.8
NC_009648:3192483:3213116321311632142371122Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomebifunctional chorismate mutase/prephenate dehydrogenase3e-0650.4
NC_015435:354837:3640563640563650901035Metallosphaera cuprina Ar-4 chromosome, complete genomechorismate mutase / prephenate dehydrogenase4e-0650.1
NC_012440:197728:2017252017252028101086Persephonella marina EX-H1, complete genomechorismate mutase/prephenate dehydratase6e-0649.3
NC_006905:2805877:2827581282758128287021122Salmonella enterica subsp. enterica serovar Choleraesuis strchorismate mutase T/prephenate dehydrogenase8e-0648.9
NC_020054:3132478:3139356313935631404561101Fibrella aestuarina BUZ 2 drat genomeDAHP synthetase I/KDSA9e-0648.9
NC_009052:1394000:1395253139525313964041152Shewanella baltica OS155, complete genomechorismate mutase9e-0648.9
NC_009665:1495473:1497975149797514991261152Shewanella baltica OS185 chromosome, complete genomebifunctional chorismate mutase/prephenate dehydrogenase1e-0548.9