Pre_GI: BLASTP Hits

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Query: NC_010572:1:22240 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 22240, End: 23709, Length: 1470

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010572:8493946:8522221852222185236901470Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative DNA helicase0987
NC_016109:8761557:8772362877236287747732412Kitasatospora setae KM-6054, complete genomeputative helicase2e-129462
NC_016109:1:85068506109172412Kitasatospora setae KM-6054, complete genomeputative helicase2e-129462
NC_010682:1652636:1658054165805416595141461Ralstonia pickettii 12J chromosome 1, complete sequenceputative DNA helicase6e-74278
NC_016603:3475843:3492753349275334942551503Acinetobacter calcoaceticus PHEA-2 chromosome, complete genomeputative DNA helicase8e-66251
NC_009801:3374501:3376149337614933776781530Escherichia coli E24377A, complete genomehypothetical protein2e-45184
NC_004578:934867:9503879503879518441458Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein1e-45184
NC_007005:1636875:1638691163869116401541464Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein7e-45182
NC_016832:4482437:4496610449661044981211512Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,DNA helicase2e-44181
NC_012125:4559990:4574162457416245756731512Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA helicase2e-44181
NC_003198:4513900:4525533452553345270441512Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative DNA helicase2e-44181
NC_004631:4494000:4508342450834245098531512Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative DNA helicase2e-44181
NC_009832:4482500:4489655448965544911001446Serratia proteamaculans 568, complete genomehypothetical protein3e-41170
NC_014029:331919:3985423985423999871446Yersinia pestis Z176003 chromosome, complete genomehelicase IV2e-40167
NC_004129:5373886:5428460542846054299201461Pseudomonas fluorescens Pf-5, complete genomehypothetical protein3e-40166
NC_004547:667988:6833326833326847921461Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein1e-39164
NC_012779:346998:3756613756613771331473Edwardsiella ictaluri 93-146, complete genomeDNA helicase3e-39163
NC_018080:5091772:5157875515787551593561482Pseudomonas aeruginosa DK2 chromosome, complete genomeDNA helicase8e-39162
NC_009656:4527457:4632866463286646343471482Pseudomonas aeruginosa PA7 chromosome, complete genomeDNA helicase2e-38160
NC_008463:5313527:5328614532861453300951482Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative helicase3e-37156
NC_008757:111292:1138381138381155051668Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completesuperfamily I DNA and RNA helicases-like protein9e-36151
NC_008255:4043045:4062538406253840643401803Cytophaga hutchinsonii ATCC 33406, complete genomesuperfamily I DNA and RNA helicase1e-28128
NC_014377:1943476:1963225196322519652762052Thermosediminibacter oceani DSM 16646 chromosome, complete genomeUvrD/REP helicase4e-23109
NC_018679:1738126:1747871174787117499672097Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completeUvrD/REP helicase5e-22105
NC_007498:919697:9368339368339387731941Pelobacter carbinolicus DSM 2380, complete genomehypothetical protein2e-0654.7