Pre_GI: BLASTP Hits

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Query: NC_010322:1520973:1530434 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1530434, End: 1531684, Length: 1251

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010939:1633000:1642833164283316440951263Actinobacillus pleuropneumoniae serovar 7 str. AP76, completePutative O-antigen transporter1e-43177
NC_014758:1207894:1237144123714412384271284Calditerrivibrio nitroreducens DSM 19672 chromosome, completepolysaccharide biosynthesis protein4e-23109
NC_014012:1676983:1687576168757616888201245Shewanella violacea DSS12, complete genomepolysaccharide biosynthesis family protein2e-1997.1
NC_013894:117644:1321121321121333981287Thermocrinis albus DSM 14484 chromosome, complete genomepolysaccharide biosynthesis protein5e-1995.9
NC_015160:136055:1439691439691452281260Odoribacter splanchnicus DSM 20712 chromosome, complete genomepolysaccharide biosynthesis protein4e-1892.8
NC_015185:1352171:1353568135356813548481281Desulfurobacterium thermolithotrophum DSM 11699 chromosome,polysaccharide biosynthesis protein5e-1892.8
NC_006510:3321426:3341644334164433429331290Geobacillus kaustophilus HTA426, complete genomeO-antigen transporter1e-1790.9
NC_014935:1389000:1409861140986114111321272Nitratifractor saLSUginis DSM 16511 chromosome, complete genomepolysaccharide biosynthesis protein2e-1687.4
NC_006510:3321426:3363539336353933647981260Geobacillus kaustophilus HTA426, complete genomeO-antigen transporter2e-1687
NC_009615:1627961:1641634164163416428841251Parabacteroides distasonis ATCC 8503 chromosome, complete genomeO-antigen transporter4e-1686.3
NC_009655:866281:8748968748968761521257Actinobacillus succinogenes 130Z chromosome, complete genomepolysaccharide biosynthesis protein6e-1685.5
NC_011026:2450325:2463753246375324650031251Chloroherpeton thalassium ATCC 35110, complete genomepolysaccharide biosynthesis protein1e-1584.7
NC_015224:1391088:1399234139923414004901257Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,translocase7e-1478.6
NC_006300:600516:6091126091126104041293Mannheimia succiniciproducens MBEL55E, complete genomeRfbX protein4e-1376.3
NC_013716:2255102:2267984226798422691951212Citrobacter rodentium ICC168, complete genomeputative O-antigen transporter6e-1375.5
NC_014119:977136:9835949835949848591266Burkholderia sp. CCGE1002 chromosome chromosome 3, completepolysaccharide biosynthesis protein7e-1375.5
NC_006582:3827844:3842212384221238434891278Bacillus clausii KSM-K16, complete genomeO-antigen transporter2e-1274.3
NC_010681:934374:9486099486099498681260Burkholderia phytofirmans PsJN chromosome 1, complete sequencepolysaccharide biosynthesis protein2e-1273.9
NC_014974:246404:2509712509712522931323Thermus scotoductus SA-01 chromosome, complete genomeO-antigen transporter5e-1272.4
NC_020260:1184174:1194615119461511958711257Cronobacter sakazakii Sp291, complete genomeO-antigen, teichoic acid lipoteichoic acids export membrane protein8e-1272
NC_004757:2451919:246404024640402464840801Nitrosomonas europaea ATCC 19718, complete genome4e-1169.3
AC_000091:2096672:2110474211047421117211248Escherichia coli W3110 DNA, complete genomepredicted polisoprenol-linked O-antigen transporter1e-1067.8
NC_000913:2092559:2106361210636121076081248Escherichia coli K12, complete genomepredicted polisoprenol-linked O-antigen transporter1e-1067.8
NC_010473:2183567:2197369219736921986161248Escherichia coli str. K-12 substr. DH10B, complete genomepredicted polisoprenol-linked O-antigen transporter1e-1067.8
NC_012759:1983975:1998844199884420000911248Escherichia coli BW2952 chromosome, complete genomeputative polisoprenol-linked O-antigen transporter1e-1067.8
NC_014408:682689:7036937036937049521260Methanothermobacter marburgensis str. Marburg chromosome, completepolysaccharide biosynthesis protein1e-1067.8
NC_010831:2078329:2094543209454320958171275Chlorobium phaeobacteroides BS1, complete genomepolysaccharide biosynthesis protein1e-1067.8
NC_012483:30784:6336163361647131353Acidobacterium capsulatum ATCC 51196, complete genomeputative O-antigen transporter3e-1066.6
NC_007613:864084:8770268770268782551230Shigella boydii Sb227, complete genomeO-antigen flippase6e-1065.9
NC_013730:7743954:7755334775533477566291296Spirosoma linguale DSM 74, complete genomepolysaccharide biosynthesis protein5e-0962.8
NC_015975:99500:1164301164301179111482Lactobacillus ruminis ATCC 27782 chromosome, complete genomeExoploysaccharide biosynthesis flippase enzyme2e-0860.8
NC_017272:607900:6201606201606214491290Thermus thermophilus SG0.5JP17-16 chromosome, complete genomepolysaccharide biosynthesis protein2e-0860.5
NC_015144:997587:1006361100636110075991239Weeksella virosa DSM 16922 chromosome, complete genomepolysaccharide biosynthesis protein3e-0860.1
NC_006461:605249:6171536171536184181266Thermus thermophilus HB8, complete genomeputative O-antigen transporter8e-0858.5
NC_009337:1200722:1214355121435512155691215Chlorobium phaeovibrioides DSM 265 chromosome, complete genomepolysaccharide biosynthesis protein1e-0758.5
NC_013204:2826500:2838118283811828394131296Eggerthella lenta DSM 2243, complete genomepolysaccharide biosynthesis protein2e-0757.8
NC_015966:2256943:2273729227372922749701242Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomepolysaccharide biosynthesis protein2e-0757.8
NC_020054:1002906:1009197100919710104951299Fibrella aestuarina BUZ 2 drat genomeputative O-antigen transporter2e-0757.4
NC_011001:1462532:1480615148061514818681254Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative exopolysaccharide transporter2e-0757
NC_020064:1547524:1581589158158915828121224Serratia marcescens FGI94, complete genomemembrane protein involved in the export of O-antigen and teichoic acid2e-0757
NC_012466:318675:3227633227633242261464Streptococcus pneumoniae JJA, complete genomeflippase Wzx2e-0757
NC_011916:467106:4804394804394817101272Caulobacter crescentus NA1000 chromosome, complete genomeoligosaccharide translocase/flippase5e-0755.8
NC_009615:487173:5063875063875078711485Parabacteroides distasonis ATCC 8503 chromosome, complete genomeCPS repeat-containing transporter8e-0755.5
NC_013198:2088780:2101894210189421033151422Lactobacillus rhamnosus GG, complete genomepolysaccharide transporter, PST family protein / flippase (wzx)7e-0755.5
NC_012914:469117:4852194852194866761458Paenibacillus sp. JDR-2, complete genomepolysaccharide biosynthesis protein7e-0755.5
NC_014334:1954333:1964711196471119661411431Lactobacillus casei str. Zhang chromosome, complete genomepolysaccharide Transporter, PST family9e-0755.1
NC_010658:1090104:1103246110324611044631218Shigella boydii CDC 3083-94, complete genomeWzx2e-0653.9
NC_009253:3272000:3301258330125833026731416Desulfotomaculum reducens MI-1 chromosome, complete genomepolysaccharide biosynthesis protein3e-0653.5
NC_011415:2346474:2365729236572923669791251Escherichia coli SE11 chromosome, complete genomehypothetical protein3e-0653.1
NC_014033:1808782:1833611183361118350591449Prevotella ruminicola 23 chromosome, complete genomePTS system polysaccharide transporter5e-0652.8