Pre_GI: BLASTP Hits

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Query: NC_010001:1488000:1507722 Clostridium phytofermentans ISDg, complete genome

Start: 1507722, End: 1508087, Length: 366

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017297:1700000:171833017183301718689360Clostridium botulinum F str. 230613 chromosome, complete genomeputative iron-dependent repressor5e-24109
NC_009699:1698951:171819717181971718556360Clostridium botulinum F str. Langeland chromosome, complete genomeiron-dependent repressor5e-24109
NC_012658:1658505:167473416747341675096363Clostridium botulinum Ba4 str. 657 chromosome, complete genomeputative iron-dependent repressor1e-22105
NC_015385:456000:476559476559476933375Treponema succinifaciens DSM 2489 chromosome, complete genomeiron (metal) dependent repressor, DtxR family1e-1995.1
NC_003552:4277937:427936842793684279850483Methanosarcina acetivorans C2A, complete genomehypothetical protein1e-1478.6
NC_015574:806762:820865820865821323459Methanobacterium sp. SWAN-1 chromosome, complete genomeiron (metal) dependent repressor, DtxR family2e-1477.4
NC_012471:1197534:123296812329681233348381Streptococcus equi subsp. equi 4047, complete genomeiron-dependent repressor protein4e-1477
NC_013204:1759985:177898117789811779364384Eggerthella lenta DSM 2243, complete genomeiron (metal) dependent repressor, DtxR family4e-1476.6
NC_012883:104987:122828122828123253426Thermococcus sibiricus MM 739, complete genomeManganese-dependent transcription regulator3e-1373.6
NC_008554:4586543:461032446103244610857534Syntrophobacter fumaroxidans MPOB, complete genomeiron (metal) dependent repressor, DtxR family4e-1270.1
NC_013165:2240377:224037722403772240811435Slackia heliotrinireducens DSM 20476, complete genomeMn-dependent transcriptional regulator4e-1270.1
NC_002936:67896:923739237393089717Dehalococcoides ethenogenes 195, complete genomeiron dependent repressor, putative4e-1270.1
NC_014363:114239:156802156802157224423Olsenella uli DSM 7084 chromosome, complete genomeiron (metal) dependent repressor, DtxR family1e-1168.6
NC_015172:1471501:150546215054621505839378Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeiron (metal) dependent repressor, DtxR family1e-1168.6
NC_013410:2037840:205849220584922058926435Fibrobacter succinogenes subsp. succinogenes S85 chromosome,DtxR family iron (metal) dependent repressor1e-1168.2
NC_003551:154883:170934170934171410477Methanopyrus kandleri AV19, complete genomeMn-dependent transcriptional regulator4e-1167
NC_013741:27353:417484174842329582Archaeoglobus profundus DSM 5631, complete genomeiron (metal) dependent repressor, DtxR family7e-1165.9
NC_013203:1447340:146155614615561461984429Atopobium parvulum DSM 20469, complete genomeiron (metal) dependent repressor, DtxR family7e-1165.9
NC_014408:1193239:121558712155871215982396Methanothermobacter marburgensis str. Marburg chromosome, completemetal-dependent transcriptional regulator7e-1165.9
NC_015499:1790186:179550217955021796221720Thermodesulfobium narugense DSM 14796 chromosome, complete genomeiron (metal) dependent repressor, DtxR family3e-1063.9
NC_016048:2873669:288808128880812888506426Oscillibacter valericigenes Sjm18-20, complete genomeputative transcriptional regulator4e-1063.5
NC_017243:1041917:104191710419171042333417Brachyspira intermedia PWS/A chromosome, complete genomeiron dependend repressor9e-1062.4
NC_014219:2491021:250366525036652504102438Bacillus selenitireducens MLS10 chromosome, complete genomeiron (metal) dependent repressor, DtxR family4e-0960.1
NC_013364:928486:933261933261933728468Escherichia coli O111:H- str. 11128, complete genomeDNA-binding transcriptional regulator6e-0959.3
NC_013353:922937:927712927712928179468Escherichia coli O103:H2 str. 12009, complete genomeDNA-binding transcriptional regulator of mntH6e-0959.3
AP010958:922937:927712927712928179468Escherichia coli O103:H2 str. 12009 DNA, complete genomeDNA-binding transcriptional regulator of mntH6e-0959.3
NC_010003:605961:624080624080624751672Petrotoga mobilis SJ95, complete genomeiron (metal) dependent repressor, DtxR family2e-0858.2
NC_009253:2927802:294803529480352948469435Desulfotomaculum reducens MI-1 chromosome, complete genomeiron dependent repressor3e-0857.4
NC_015555:211935:229660229660230130471Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeiron (metal) dependent repressor, DtxR family6e-0856.2
NC_014378:4428:204002040020885486Acetohalobium arabaticum DSM 5501 chromosome, complete genomeiron (metal) dependent repressor, DtxR family7e-0856.2
NC_009485:1604942:164018716401871640612426Bradyrhizobium sp. BTAi1 chromosome, complete genomemanganese transport regulator MntR9e-0855.8
NC_013895:1332832:1339746133974613409031158Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeiron dependent repressor, N-terminal DNA binding domain protein9e-0855.8
NC_015519:801929:801929801929802411483Tepidanaerobacter sp. Re1 chromosome, complete genomeiron (metal) dependent repressor, DtxR family6e-0752.8
NC_008536:2775517:279104327910432791699657Solibacter usitatus Ellin6076, complete genomeiron (metal) dependent repressor, DtxR family1e-0652
NC_014328:3747973:375371137537113754181471Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative metal dependent transcriptional regulator1e-0651.6
NC_014376:3593500:360909336090933609512420Clostridium saccharolyticum WM1 chromosome, complete genomeiron dependent repressor3e-0650.8
NC_014532:2989185:300928430092843009694411Halomonas elongata DSM 2581, complete genomemanganese transport regulator MntR3e-0650.8