Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:2037840 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
203784020409773138glycoside hydrolase family proteinQuickGO ontologyBLASTP
204097420422781305xanthine permeaseQuickGO ontologyBLASTP
20423182042899582xanthine phosphoribosyltransferaseQuickGO ontologyBLASTP
20431462044072927hypothetical proteinBLASTP
204459820463371740phosphoadenosine phosphosulfate reductaseQuickGO ontologyBLASTP
20463382047246909hypothetical proteinBLASTP
204723320508773645hypothetical proteinBLASTP
205087720520311155cysteine desulfuraseQuickGO ontologyBLASTP
205204320542742232type III restriction protein res subunitQuickGO ontologyBLASTP
20542672054434168hypothetical protein
205441620564101995hypothetical proteinBLASTP
20564232056950528hypothetical protein
205695020580801131RNA polymerase sigma 70 family subunitQuickGO ontologyBLASTP
20584922058926435DtxR family iron metal dependent repressorQuickGO ontologyBLASTP
20589292059213285FeoA family proteinQuickGO ontologyBLASTP
205921320620802868ferrous iron transport protein BQuickGO ontologyBLASTP
20621912062295105hypothetical protein
206236220634861125hypothetical protein
20637682064328561hypothetical proteinBLASTP
20644622064890429flavodoxinQuickGO ontologyBLASTP
20651262065350225hypothetical protein
206551820676172100heavy metal translocating P-type ATPaseQuickGO ontologyBLASTP
206767520687481074filamentation induced by cAMP protein ficQuickGO ontologyBLASTP
206889620712652370exporter of the RND superfamily protein-like proteinQuickGO ontologyBLASTP