Pre_GI: BLASTP Hits

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Query: NC_009800:349592:378463 Escherichia coli HS, complete genome

Start: 378463, End: 379224, Length: 762

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011415:351810:361969361969362730762Escherichia coli SE11 chromosome, complete genomehypothetical protein6e-149526
NC_008563:318993:349445349445350206762Escherichia coli APEC O1, complete genomehypothetical protein2e-142504
NC_007946:289425:347853347853348614762Escherichia coli UTI89, complete genomehypothetical protein2e-142504
NC_004431:364000:412381412381413142762Escherichia coli CFT073, complete genomehypothetical protein6e-141499
NC_008253:334467:404549404549405310762Escherichia coli 536, complete genomeputative cytoplasmic protein9e-140495
NC_006511:2090058:210681421068142107554741Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein6e-37154
NC_011147:2085241:210199721019972102737741Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein6e-37154
NC_011083:824659:831401831401832141741Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein3e-36152
NC_010102:2322866:234035623403562341096741Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-35149
NC_003198:751779:758250758250758990741Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-35149
NC_003197:776238:782991782991783731741Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein3e-35149
NC_004631:2205821:222210522221052222845741Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein3e-35149
NC_016810:775649:782402782402783142741Salmonella enterica subsp. enterica serovar Typhimurium strputative transport protein3e-35149
NC_016856:776735:783488783488784228741Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein3e-35149
NC_016857:775649:782402782402783142741Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein3e-35149
NC_016860:816000:821821821821822561741Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-35149
NC_016863:776734:783487783487784227741Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein3e-35149
NC_017046:775636:782389782389783129741Salmonella enterica subsp. enterica serovar Typhimurium str. 798transport protein3e-35149
NC_011094:842038:848833848833849531699Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein4e-35148
NC_011080:780850:787644787644788342699Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein7e-35147
NC_016832:2201860:221887022188702219568699Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein5e-34144