Pre_GI: BLASTP Hits

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Query: NC_009800:2995958:3016616 Escherichia coli HS, complete genome

Start: 3016616, End: 3016948, Length: 333

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010468:906957:922076922076922408333Escherichia coli ATCC 8739, complete genomehypothetical protein7e-58221
NC_013008:3761467:377905837790583779390333Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeType III secretion apparatus protein4e-57219
NC_011353:3805819:382433238243323824664333Escherichia coli O157:H7 str. EC4115 chromosome, complete genometype III secretion apparatus protein EprJ4e-57219
NC_002655:3769643:378723537872353787567333Escherichia coli O157:H7 EDL933, complete genomeputative Type III secretion apparatus protein4e-57219
NC_002695:3702344:371993537199353720267333Escherichia coli O157:H7 str. Sakai, complete genomeEprJ4e-57219
NC_011751:3285646:330416033041603304492333Escherichia coli UMN026 chromosome, complete genomeputative type III secretion apparatus protein3e-56216
CP002185:3167738:318743231874323187719288Escherichia coli W, complete genometruncated type III secretion apparatus protein2e-47187
AP010958:3474077:349238934923893492676288Escherichia coli O103:H2 str. 12009 DNA, complete genometype III secretion protein EprJ2e-47187
NC_013353:3474077:349238934923893492676288Escherichia coli O103:H2 str. 12009, complete genometype III secretion protein EprJ2e-47187
CP002516:903241:918357918357918688332Escherichia coli KO11, complete genome2e-47187
NC_013364:3552284:357060335706033570890288Escherichia coli O111:H- str. 11128, complete genome5e-47186
NC_013361:3867558:388587138858713886158288Escherichia coli O26:H11 str. 11368 chromosome, complete genometype III secretion protein EprJ2e-46184
NC_011741:3030324:304863730486373048852216Escherichia coli IAI1 chromosome, complete genome2e-32137
NC_011415:3217796:323610932361093236324216Escherichia coli SE11 chromosome, complete genomeputative type III secretion protein2e-32137
NC_011748:3196173:321448632144863214701216Escherichia coli 55989, complete genome2e-32137
CU928145:3196173:321448632144863214701216Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein, putative type III secretion apparatus protein (partial)2e-32137
CU928160:3030324:304863730486373048852216Escherichia coli IAI1 chromosome, complete genomefragment of conserved hypothetical protein, putative type III secretion apparatus protein (partial)2e-32137