Pre_GI: BLASTP Hits

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Query: NC_009800:12162:15560 Escherichia coli HS, complete genome

Start: 15560, End: 16672, Length: 1113

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012967:12161:1544315443165551113Escherichia coli B str. REL606 chromosome, complete genomeIS186/IS421 transposase0753
NC_012947:3753375:3767167376716737682791113Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetransposase IS4 family protein0753
NC_010468:3970995:3985628398562839867401113Escherichia coli ATCC 8739, complete genometransposase IS4 family protein0753
NC_009788:16360:2216622166233681203Escherichia coli E24377A plasmid pETEC_73, complete sequenceIS186, transposase0696
NC_009837:92000:1036701036701052411572Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequenceCvaB, IS186 transposase0671
NC_007385:157516:163371163371164087717Shigella sonnei Ss046 plasmid pSS_046, complete sequenceIS186 ORF19e-135479
NC_007607:87000:916379163792329693Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS186 ORF15e-131468
NC_011768:1718869:1718869171886917199841116Desulfatibacillum alkenivorans AK-01, complete genometransposase IS4 family protein5e-44178
NC_016112:3190891:3209297320929732106431347Methylomicrobium alcaliphilum chromosome, complete genomehypothetical protein1e-28127
NC_016593:3249767:3273164327316432744951332Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetransposase3e-1583.2
NC_002978:234082:2377482377482390761329Wolbachia endosymbiont of Drosophila melanogaster, complete genometransposase, IS4 family2e-0860.5
NC_009617:4946000:4969048496904849704301383Clostridium beijerinckii NCIMB 8052 chromosome, complete genometransposase, IS4 family protein9e-0858.2
NC_020050:296702:3169893169893179991011Cylindrospermum stagnale PCC 7417 plasmid pCYLST.01, partialtransposase family protein6e-0755.5
NC_010368:1:99089908112421335Halobacterium salinarum R1 plasmid PHS3, complete sequencetransposase (ISH5)8e-0755.1
NC_019962:492000:4995174995175008511335Natrinema pellirubrum DSM 15624, complete genometransposase family protein8e-0755.1
NC_019962:304899:3165463165463178801335Natrinema pellirubrum DSM 15624, complete genometransposase family protein8e-0755.1
NC_010369:1:141412881275Halobacterium salinarum R1 plasmid PHS2, complete sequencetransposase (ISH8)3e-0653.5
NC_018870:115982:164152164152165111960Thermacetogenium phaeum DSM 12270 chromosome, complete genomeIS4-like transposase4e-0652.8
NC_005139:2201820:2256801225680122581381338Vibrio vulnificus YJ016 chromosome I, complete sequencetransposase and inactivated derivative4e-0652.8
NC_010368:140500:1460011460011473351335Halobacterium salinarum R1 plasmid PHS3, complete sequencetransposase (ISH5)4e-0652.8
NC_008750:2332000:234732723473272347902576Shewanella sp. W3-18-1, complete genome5e-0652.4
NC_015416:1872000:1881144188114418824961353Methanosaeta concilii GP-6 chromosome, complete genometransposase, IS4 family7e-0652
NC_009656:115390:1249551249551262261272Pseudomonas aeruginosa PA7 chromosome, complete genometransposase DDE domain-containing protein8e-0652