Pre_GI: BLASTP Hits

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Query: NC_009439:4913767:4913767 Pseudomonas mendocina ymp, complete genome

Start: 4913767, End: 4916010, Length: 2244

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014532:1307983:1311089131108913133532265Halomonas elongata DSM 2581, complete genomeputative exported oxidoreductase subunit0848
NC_003295:659837:6740336740336762432211Ralstonia solanacearum GMI1000, complete genomePUTATIVE DEHYDROGENASE LARGE CHAIN TRANSMEMBRANE PROTEIN0789
NC_014310:1130344:1130344113034411325512208Ralstonia solanacearum PSI07 megaplasmid, complete sequenceisoquinoline 1-oxidoreductase subunit beta0766
NC_016002:2825017:2842516284251628447262211Pseudogulbenkiania sp. NH8B, complete genomeisoquinoline 1-oxidoreductase subunit beta0750
NC_010515:1900967:1913478191347819157422265Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencealdehyde oxidase and xanthine dehydrogenase molybdopterin binding0651
NC_008061:2773670:2786181278618127884452265Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceputative isoquinoline 1-oxidoreductase beta subunit0651
NC_008543:2474002:2478563247856324808272265Burkholderia cenocepacia HI2424 chromosome 2, complete sequencealdehyde oxidase and xanthine dehydrogenase, a/b hammerhead0651
NC_017249:3406570:3406570340657034087772208Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-128461
NC_008543:2220698:2244084224408422463182235Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceIsoquinoline 1-oxidoreductase2e-123444
NC_008061:190287:2333482333482355822235Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceTwin-arginine translocation pathway signal2e-123444
NC_010515:2111691:2157669215766921599032235Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencealdehyde oxidase and xanthine dehydrogenase molybdopterin binding2e-123444
NC_016025:552000:5697185697185718502133Candidatus Chloracidobacterium thermophilum B chromosome chromosomeAerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL like protein4e-123442
NC_009439:2427120:2431004243100424331962193Pseudomonas mendocina ymp, complete genomealdehyde oxidase and xanthine dehydrogenase, molybdopterin binding6e-115415
NC_007645:5160133:5190056519005651922542199Hahella chejuensis KCTC 2396, complete genomeAerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL-like protein1e-114414
NC_002947:2809591:2824385282438528265772193Pseudomonas putida KT2440, complete genomeisoquinoline 1-oxidoreductase, beta subunit, putative2e-107390
NC_011001:2327633:2332744233274423350412298Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative isoquinoline 1-oxidoreductase subunit beta2e-101370
NC_013730:1342500:1352425135242513545782154Spirosoma linguale DSM 74, complete genomealdehyde oxidase and xanthine dehydrogenase molybdopterin binding protein2e-88327
NC_020054:2033982:2046441204644120485912151Fibrella aestuarina BUZ 2 drat genomealdehyde oxidase and xanthine dehydrogenase molybdopterin binding protein1e-85318
NC_017030:4588167:4588167458816745904342268Corallococcus coralloides DSM 2259 chromosome, complete genomeisoquinoline 1-oxidoreductase subunit beta2e-78294
NC_008571:505776:5158745158745181502277Gramella forsetii KT0803, complete genomemolybdenum-dependent oxidoreductase molybdenum-b inding subunit1e-75285
NC_009092:2644164:2644164264416426464072244Shewanella loihica PV-4, complete genomealdehyde oxidase and xanthine dehydrogenase, molybdopterin binding2e-75284
NC_010725:750911:7675147675147697722259Methylobacterium populi BJ001, complete genomealdehyde oxidase and xanthine dehydrogenase molybdopterin binding4e-74280
NC_017082:5925357:5945893594589359481452253Bradyrhizobium sp. S23321, complete genomealdehyde oxidase and xanthine dehydrogenase4e-73276
NC_012489:3425416:3428093342809334303722280Gemmatimonas aurantiaca T-27, complete genomeputative oxidoreductase7e-71269
NC_017033:276741:2780382780382802932256Frateuria aurantia DSM 6220 chromosome, complete genomeaerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein7e-62239
NC_020064:2697116:2712505271250527147422238Serratia marcescens FGI94, complete genomeaerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein2e-61237
NC_010625:1415500:1417833141783314200912259Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencealdehyde oxidase and xanthine dehydrogenase molybdopterin binding8e-60232
NC_008095:2071500:2075851207585120780072157Myxococcus xanthus DK 1622, complete genomeisoquinoline 1-oxidoreductase, beta subunit3e-59230
NC_015563:3203012:3246786324678632490862301Delftia sp. Cs1-4 chromosome, complete genomealcdhyde dehydrogenase2e-35151
NC_010002:4326509:4329687432968743319872301Delftia acidovorans SPH-1, complete genomealdehyde oxidase and xanthine dehydrogenase molybdopterin binding2e-35151
NC_007510:1959883:1979409197940919816822274Burkholderia sp. 383 chromosome 1, complete sequenceputative aldehyde dehydrogenase2e-33144
NC_007492:2771021:2798070279807028003072238Pseudomonas fluorescens PfO-1, complete genomeTwin-arginine translocation pathway signal6e-29129
NC_014540:1835493:1835493183549318391283636Burkholderia sp. CCGE1003 chromosome 2, complete sequencealdehyde oxidase and xanthine dehydrogenase molybdopterin-binding protein2e-27124
NC_007412:147757:1542291542291565202292Anabaena variabilis ATCC 29413 plasmid C, complete sequenceAldehyde oxidase and xanthine dehydrogenase, a/b hammerhead2e-1378.2
NC_010718:2265447:227524622752462276232987Natranaerobius thermophilus JW/NM-WN-LF, complete genomealdehyde oxidase and xanthine dehydrogenase molybdopterin binding3e-1067.4
NC_009633:712500:7226417226417249562316Alkaliphilus metalliredigens QYMF chromosome, complete genomemolybdopterin binding aldehyde oxidase and xanthine dehydrogenase3e-0964.3
NC_019978:1022209:1039766103976610410791314Halobacteroides halobius DSM 5150, complete genomeaerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein6e-0963.5
NC_011892:77975:7797577975801942220Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completealdehyde oxidase and xanthine dehydrogenase molybdopterin binding7e-0963.2
NC_013315:2232339:2238800223880022410912292Clostridium difficile CD196 chromosome, complete genomexanthine dehydrogenase, molybdenum binding subunit3e-0861.2
NC_013316:2309694:2319354231935423216452292Clostridium difficile R20291, complete genomexanthine dehydrogenase, molybdenum binding subunit3e-0861.2
NC_014654:2311818:2320194232019423224882295Halanaerobium sp. 'sapolanicus' chromosome, complete genomealdehyde oxidase and xanthine dehydrogenase molybdopterin binding protein7e-0859.7
NC_011770:3735162:3753040375304037552472208Pseudomonas aeruginosa LESB58, complete genomeputative hydroxylase large subunit1e-0759.3
NC_014041:3229867:3235801323580132379722172Zunongwangia profunda SM-A87 chromosome, complete genomemolybdenum-dependent oxidoreductase molybdenum-binding subunit2e-0758.9
NC_008463:3503576:3517005351700535192092205Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative hydroxylase large subunit1e-0758.9
NC_014654:2311818:231243223124322313427996Halanaerobium sp. 'sapolanicus' chromosome, complete genomealdehyde oxidase and xanthine dehydrogenase molybdopterin binding protein1e-0758.9
NC_013316:2309694:2309694230969423120002307Clostridium difficile R20291, complete genomexanthine dehydrogenase, molybdenum binding subunit1e-0758.9
NC_015519:426948:451275451275452261987Tepidanaerobacter sp. Re1 chromosome, complete genomeXanthine dehydrogenase1e-0758.9
NC_013159:2913927:2931266293126629333772112Saccharomonospora viridis DSM 43017, complete genomexanthine dehydrogenase, molybdenum binding subunit apoprotein3e-0758.2
NC_007778:5079500:5097853509785351000962244Rhodopseudomonas palustris HaA2, complete genomeAldehyde oxidase and xanthine dehydrogenase, molybdopterin binding2e-0758.2
NC_002516:2113186:2113186211318621153902205Pseudomonas aeruginosa PAO1, complete genomeprobable hydroxylase large subunit2e-0758.2
NC_009922:411434:430112430112431098987Alkaliphilus oremlandii OhILAs, complete genomealdehyde oxidase and xanthine dehydrogenase, molybdopterin binding2e-0758.2
NC_015593:2103815:2123621212362121258372217Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeXanthine dehydrogenase2e-0758.2
NC_013956:4627890:4651338465133846536742337Pantoea ananatis LMG 20103 chromosome, complete genomeYagR1e-0656.2
NC_008010:449652:4496524496524520542403Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceXanthine dehydrogenase5e-0653.9
NC_011757:1146608:1149335114933511515542220Methylobacterium chloromethanicum CM4, complete genomealdehyde oxidase and xanthine dehydrogenase molybdopterin binding5e-0653.9
NC_021182:401129:4229894229894252622274Clostridium pasteurianum BC1, complete genomeaerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein8e-0653.1
NC_009922:411434:4288564288564301121257Alkaliphilus oremlandii OhILAs, complete genomealdehyde oxidase and xanthine dehydrogenase a/b hammerhead9e-0652.8
NC_016751:1740265:1745819174581917481672349Marinitoga piezophila KA3 chromosome, complete genomeaerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein9e-0652.8