Pre_GI: BLASTP Hits

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Query: NC_009439:4734237:4749385 Pseudomonas mendocina ymp, complete genome

Start: 4749385, End: 4750377, Length: 993

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:2671508:267355826735582674532975Pseudomonas syringae pv. tomato str. DC3000, complete genomeABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family2e-115416
NC_009439:4734237:473761347376134738593981Pseudomonas mendocina ymp, complete genomealiphatic sulfonate ABC transporter periplasmic ligand-binding protein1e-69263
NC_016830:6499234:650119765011976502162966Pseudomonas fluorescens F113 chromosome, complete genomeSsuA protein3e-66252
NC_008544:348500:364819364819365790972Burkholderia cenocepacia HI2424 chromosome 3, complete sequencealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein5e-65248
NC_008062:370902:386999386999387970972Burkholderia cenocepacia AU 1054 chromosome 3, complete sequenceABC transporter, substrate-binding protein, aliphatic sulphonates6e-65248
NC_007509:3668:487648765847972Burkholderia sp. 383 chromosome 3, complete sequenceABC transporter, substrate-binding protein, aliphatic sulphonates9e-65247
NC_007509:1383013:487648765847972Burkholderia sp. 383 chromosome 3, complete sequenceABC transporter, substrate-binding protein, aliphatic sulphonates9e-65247
NC_010512:734834:750846750846751817972Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein3e-64245
NC_008392:542000:543030543030544001972Burkholderia cepacia AMMD chromosome 3, complete sequencealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein2e-63243
NC_016023:1839503:183950318395031840489987Bacillus coagulans 36D1 chromosome, complete genomealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein1e-62239
NC_016816:1970189:197217019721701973117948Pantoea ananatis LMG 5342, complete genomealiphatic sulfonate ABC transporter substrate-binding protein1e-55217
NC_009659:1129066:114738211473821148344963Janthinobacterium sp. Marseille chromosome, complete genomesulfonate ABC transporter periplasmic sulfonate-binding protein SsuA2e-55216
NC_021066:2197490:219653121965312197493963Raoultella ornithinolytica B6, complete genomealiphatic sulfonate ABC transporter substrate-binding protein2e-54213
NC_014121:2745097:274413827441382745100963Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completealkanesulfonate transporter substrate-binding subunit4e-50198
NC_016816:1970189:1970189197018919720751887Pantoea ananatis LMG 5342, complete genomeFis family sigma-54 specific transcriptional regulator5e-41168
NC_013510:517878:534199534199535191993Thermomonospora curvata DSM 43183, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein5e-37155
NC_010725:5217260:523224952322495233190942Methylobacterium populi BJ001, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein2e-26120
NC_013406:1217385:126499712649971265896900Paenibacillus sp. Y412MC10 chromosome, complete genomealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein2e-24113
NC_021182:4186515:4198028419802841990291002Clostridium pasteurianum BC1, complete genomeABC transporter, substrate-binding protein, aliphatic sulfonates family2e-23110
NC_009485:3461051:346335634633563464297942Bradyrhizobium sp. BTAi1 chromosome, complete genomealkanesulfonate ABC transporter substrate binding protein4e-23108
NC_010581:561579:581203581203582177975Beijerinckia indica subsp. indica ATCC 9039, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein1e-22107
NC_010505:1205747:120989612098961210894999Methylobacterium radiotolerans JCM 2831, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein1e-21103
NC_020064:3998715:403051240305124031486975Serratia marcescens FGI94, complete genomeABC transporter, substrate-binding protein, aliphatic sulfonates family1e-21103
NC_009439:4734237:474664147466414747633993Pseudomonas mendocina ymp, complete genomealiphatic sulfonate ABC transporter periplasmic ligand-binding protein3e-21102
NC_012791:4079062:409435240943524095317966Variovorax paradoxus S110 chromosome 1, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein2e-20100
NC_016604:2944555:294455529445552945532978Mycobacterium rhodesiae NBB3 chromosome, complete genomeABC transporter, substrate-binding protein, aliphatic sulfonates family2e-20100
NC_007509:644000:648999648999649997999Burkholderia sp. 383 chromosome 3, complete sequenceABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein2e-1893.2
NC_019673:9084045:9099799909979991008601062Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein4e-1892.4
NC_007952:444616:4446164446164456201005Burkholderia xenovorans LB400 chromosome 2, complete sequenceABC sulfonate transporter, periplasmic ligand binding protein5e-1892
NC_013406:1217385:126284012628401263826987Paenibacillus sp. Y412MC10 chromosome, complete genomealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein2e-1790.5
NC_008060:1346581:136220513622051363194990Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein2e-1790.1
NC_008544:818730:820796820796821785990Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein2e-1790.1
NC_020064:3998715:402387240238724024816945Serratia marcescens FGI94, complete genomeABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component1e-1687.4
NC_012791:4079062:410154141015414102530990Variovorax paradoxus S110 chromosome 1, complete genomeextracellular solute-binding protein family 34e-1582.4
NC_007907:2830574:2837069283706928380701002Desulfitobacterium hafniense Y51, complete genomehypothetical protein9e-1478.2
NC_010581:561579:5789225789225799471026Beijerinckia indica subsp. indica ATCC 9039, complete genomeABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family, putative1e-1377.4
NC_020291:1535402:1552909155290915539551047Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomenitrate/sulfonate/bicarbonate ABC transport system substrate binding protein SsuA1e-1274.3
NC_020291:4246500:4268423426842342694631041Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometaurine-binding periplasmic protein TauA1e-0861.2
NC_007644:469181:4691814691814702241044Moorella thermoacetica ATCC 39073, complete genomeABC transporter, substrate-binding protein, aliphatic sulphonates1e-0860.8
NC_015589:870804:8831768831768841981023Desulfotomaculum ruminis DSM 2154 chromosome, complete genomefamily 3 extracellular solute-binding protein2e-0860.5
NC_015565:1163148:1169787116978711707941008Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein2e-0860.5
NC_015565:1163148:1171741117174111727751035Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein8e-0755.1
NC_015565:1163148:1165148116514811661881041Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein1e-0654.3
NC_018664:2638102:2645472264547226465121041Clostridium acidurici 9a chromosome, complete genomeABC transporter periplasmic aliphatic sulfonates-binding protein SsuA3e-0653.1
NC_015172:951550:9572569572569583621107Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein4e-0652.8
NC_013894:672840:680907680907681881975Thermocrinis albus DSM 14484 chromosome, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein9e-0651.6