Pre_GI: BLASTP Hits

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Query: NC_009439:4661102:4667090 Pseudomonas mendocina ymp, complete genome

Start: 4667090, End: 4667548, Length: 459

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005085:1269787:132167413216741322117444Chromobacterium violaceum ATCC 12472, complete genomeribonuclease H1e-0858.9
NC_009439:4661102:466784046678404668328489Pseudomonas mendocina ymp, complete genomeribonuclease H1e-0858.5
NC_008313:2685531:268722326872232687660438Ralstonia eutropha H16 chromosome 1, complete sequenceRibonuclease HI6e-0856.2
NC_008601:1151653:115122011512201151678459Francisella tularensis subsp. novicida U112, complete genomeribonuclease H9e-0855.8
NC_010677:707881:730309730309730767459Francisella tularensis subsp. mediasiatica FSC147, complete genomeRibonuclease H9e-0855.8
NC_015731:1731896:174266317426631743127465Nitrosomonas sp. Is79A3 chromosome, complete genomeRibonuclease H1e-0755.5
NC_015856:1733500:173704417370441737478435Collimonas fungivorans Ter331 chromosome, complete genomeribonuclease HI2e-0754.7
NC_009697:419443:437417437417437866450Clostridium botulinum A str. ATCC 19397 chromosome, completeribonuclease H2e-0754.7
NC_007508:1221500:122480012248001225252453Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeribonuclease H1e-0652.4
NC_007797:107950:114020114020114472453Anaplasma phagocytophilum HZ, complete genomeribonuclease H11e-0652
NC_013173:302375:314342314342314818477Desulfomicrobium baculatum DSM 4028, complete genomeRibonuclease H1e-0652
NC_010531:708049:723840723840724304465Polynucleobacter necessarius STIR1, complete genomeribonuclease H2e-0651.6
NC_017518:1701958:170195817019581702395438Neisseria meningitidis NZ-05/33 chromosome, complete genomeribonuclease HI2e-0651.2
NC_015738:978794:104703510470351047529495Eggerthella sp. YY7918, complete genomehypothetical protein2e-0651.2
NC_010524:2117347:213815921381592138641483Leptothrix cholodnii SP-6, complete genomeribonuclease H3e-0650.8
NC_010981:242500:283821283821284354534Wolbachia pipientis, complete genomeribonuclease h3e-0650.8
NC_009939:16437:181381813818617480Deinococcus geothermalis DSM 11300 plasmid pDGEO02, completeribonuclease H6e-0649.7
NC_014960:1735786:176591417659141766435522Anaerolinea thermophila UNI-1, complete genomeribonuclease H6e-0649.7