Pre_GI: BLASTP Hits

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Query: NC_009439:1174432:1177587 Pseudomonas mendocina ymp, complete genome

Start: 1177587, End: 1178498, Length: 912

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015740:3486226:350448835044883505387900Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein2e-86318
NC_016803:593484:612572612572613468897Desulfovibrio desulfuricans ND132 chromosome, complete genomehypothetical protein2e-35149
NC_010410:3719599:374272537427253743645921Acinetobacter baumannii AYE, complete genomehypothetical protein7e-31134
NC_014844:1634985:164054116405411641428888Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomehypothetical protein3e-27122
NC_018691:4619245:464188646418864642794909Alcanivorax dieselolei B5 chromosome, complete genomehypothetical protein1e-25117
NC_014166:401815:419362419362420255894Arcobacter nitrofigilis DSM 7299 chromosome, complete genomehypothetical protein2e-25116
NC_014310:2017927:203965620396562040549894Ralstonia solanacearum PSI07 megaplasmid, complete sequencetransporter, permease of the drug/metabolite transporter2e-23110
NC_014541:1753776:175518117551811756080900Ferrimonas balearica DSM 9799 chromosome, complete genomeprotein of unknown function DUF6 transmembrane1e-23110
NC_012880:1127997:112892511289251129857933Dickeya dadantii Ech703, complete genomeprotein of unknown function DUF6 transmembrane3e-22105
NC_014839:12519:328603286033792933Pantoea sp. At-9b plasmid pPAT9B02, complete sequencehypothetical protein3e-21102
NC_015637:325561:339503339503340402900Vibrio anguillarum 775 chromosome chromosome II, complete sequencedrug/metabolite exporter family transporter7e-21101
NC_015947:3991696:399332539933253994275951Burkholderia sp. JV3 chromosome, complete genomehypothetical protein1e-20100
NC_015138:3809732:381715538171553818057903Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehypothetical protein2e-20100
NC_011071:4000620:400474340047434005636894Stenotrophomonas maltophilia R551-3, complete genomeprotein of unknown function DUF6 transmembrane5e-2098.6
NC_015380:412277:412277412277413116840Candidatus Pelagibacter sp. IMCC9063 chromosome, complete genometransporter5e-2098.6
NC_019896:17873:244662446625383918Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completetransport protein YyaM5e-2098.6
NC_009348:1968826:198698619869861987906921Aeromonas salmonicida subsp. salmonicida A449, complete genomeDMT family permease6e-2098.2
NC_010512:866932:868371868371869279909Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceprotein of unknown function DUF6 transmembrane9e-1994.4
NC_015580:3252534:326499932649993265958960Novosphingobium sp. PP1Y, complete genomehypothetical protein4e-1892
NC_008752:3828438:383318638331863834088903Acidovorax avenae subsp. citrulli AAC00-1, complete genomeprotein of unknown function DUF6, transmembrane8e-1891.3
NC_011313:871445:873731873731874627897Aliivibrio salmonicida LFI1238 chromosome 2, complete sequenceintegral membrane protein2e-1789.7
NC_003909:927955:941809941809942720912Bacillus cereus ATCC 10987, complete genometransporter, EamA family3e-1685.9
NC_014976:2175667:218663721866372187554918Bacillus subtilis BSn5 chromosome, complete genomeputative efflux transporter1e-1584.3
NC_007503:2010858:201156320115632012489927Carboxydothermus hydrogenoformans Z-2901, complete genomehypothetical protein2e-1583.2
NC_016845:2691129:271174827117482712674927Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein8e-1581.3
NC_017200:4240500:424216142421614243090930Bacillus thuringiensis serovar finitimus YBT-020 chromosome,integral membrane protein9e-1581.3
NC_012731:2650603:267120226712022672116915Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein7e-1478.2
NC_009648:1914621:193522119352211936135915Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein2e-1376.3
NC_017208:4662500:466408846640884664993906Bacillus thuringiensis serovar chinensis CT-43 chromosome, completedrug/metabolite exporter family6e-1375.1
NC_015663:5253242:527374652737465274642897Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein1e-1273.9
NC_011772:4606000:460887346088734609778906Bacillus cereus G9842, complete genomeYyaM2e-1273.6
NC_016751:469289:469289469289470164876Marinitoga piezophila KA3 chromosome, complete genomeDMT(drug/metabolite transporter) superfamily permease3e-1272.8
NC_014650:1862165:186939718693971870341945Geobacillus sp. Y4.1MC1 chromosome, complete genomehypothetical protein4e-1272
NC_015660:1869962:188670818867081887652945Geobacillus thermoglucosidasius C56-YS93 chromosome, completehypothetical protein4e-1272
NC_014618:2705769:271783827178382718752915Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein9e-1271.2
NC_010644:254725:269478269478270395918Elusimicrobium minutum Pei191, complete genomehypothetical protein3e-1169.3
NC_017208:256163:299415299415300335921Bacillus thuringiensis serovar chinensis CT-43 chromosome, completedrug/metabolite exporter family4e-1065.5
NC_006526:1976779:2008049200804920093861338Zymomonas mobilis subsp. mobilis ZM4, complete genomeconjugal transfer protein7e-1064.7
NC_015663:1869000:189421518942151895126912Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein2e-0963.2
NC_014171:261952:309552309552310472921Bacillus thuringiensis BMB171 chromosome, complete genomedrug/metabolite exporter family protein3e-0962.8
NC_021182:1188000:119757811975781198474897Clostridium pasteurianum BC1, complete genomeDMT(drug/metabolite transporter) superfamily permease4e-0962.4
NC_015164:1646753:165959016595901660471882Bacteroides salanitronis DSM 18170 chromosome, complete genomehypothetical protein4e-0962
NC_007103:230872:261405261405262283879Bacillus cereus E33L plasmid pE33L466, complete sequencepossible drug/metabolite exporter9e-0961.2
NC_013517:2633574:264900826490082649889882Sebaldella termitidis ATCC 33386, complete genomeprotein of unknown function DUF6 transmembrane2e-0859.7
NC_014034:1418681:144397314439731444884912Rhodobacter capsulatus SB1003 chromosome, complete genomehypothetical protein3e-0859.3
NC_014734:2285762:228719122871912288114924Paludibacter propionicigenes WB4 chromosome, complete genomehypothetical protein4e-0858.9
NC_012581:1075663:109223910922391093123885Bacillus anthracis str. CDC 684 chromosome, complete genometransporter, EamA family7e-0858.2
NC_014976:2735423:274990927499092750793885Bacillus subtilis BSn5 chromosome, complete genomehypothetical protein1e-0757.8
NC_019896:3491000:349789834978983498782885Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeMembrane protein YdzE2e-0757
NC_011772:3259483:327686232768623277746885Bacillus cereus G9842, complete genometransporter, EamA family2e-0756.6
NC_012785:205502:209515209515210432918Kosmotoga olearia TBF 19.5.1, complete genomeprotein of unknown function DUF6 transmembrane7e-0755.1
NC_017047:2079368:209824020982402099154915Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein9e-0754.7
NC_008711:1224164:123427412342741235200927Arthrobacter aurescens TC1, complete genomeputative transmembrane protein1e-0653.9
NC_000964:521975:560724560724560960237Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein1e-0653.9
NC_020291:552104:572569572569573507939Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomedrug/metabolite transporter, EamA family2e-0653.1
NC_009925:5957806:596125859612585962133876Acaryochloris marina MBIC11017, complete genomecarboxylate/amino acid/amine transporter, putative3e-0652.8
NC_017030:3771675:377167537716753772538864Corallococcus coralloides DSM 2259 chromosome, complete genomedrug/metabolite exporter family protein4e-0652.4
NC_014624:2569604:257224625722462573181936Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein5e-0652
NC_009256:2509806:253380925338092534711903Burkholderia vietnamiensis G4 chromosome 1, complete sequencehypothetical protein5e-0652
NC_017195:2027430:204812220481222049063942Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completehypothetical protein6e-0652
NC_015931:1537960:157639915763991577334936Pyrolobus fumarii 1A, complete genomehypothetical protein6e-0652