Pre_GI: BLASTP Hits

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Query: NC_009089:581655:586031 Clostridium difficile 630, complete genome

Start: 586031, End: 586417, Length: 387

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013895:1332832:136865113686511369037387Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completehypothetical protein5e-64242
NC_016630:1247251:126400612640061264389384Filifactor alocis ATCC 35896 chromosome, complete genomehypothetical protein7e-63238
NC_009089:3889811:390957939095793909956378Clostridium difficile 630, complete genomeconjugative transposon conserved hypothetical protein1e-52204
NC_017179:4023139:402994340299434030326384Clostridium difficile BI1, complete genomeconjugative transposon protein4e-41166
NC_015977:2966971:298340629834062983789384Roseburia hominis A2-183 chromosome, complete genomeconjugative transposon protein8e-40162
NC_009089:428075:452608452608452997390Clostridium difficile 630, complete genomeconjugative transposon protein4e-40162
NC_004668:2198027:226595722659572266328372Enterococcus faecalis V583, complete genomehypothetical protein3e-39160
NC_009089:3935500:396323639632363963619384Clostridium difficile 630, complete genomeconjugative transposon protein2e-34144
NC_011593:1163000:117597311759731176353381Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,hypothetical protein2e-1787.4
NC_000964:521975:532483532483532863381Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein3e-0960.5
NC_017219:1163000:117599511759951176144150Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein4e-0857