Pre_GI: BLASTP Hits

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Query: NC_009089:428075:448992 Clostridium difficile 630, complete genome

Start: 448992, End: 449213, Length: 222

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009089:3935500:396008339600833960304222Clostridium difficile 630, complete genomeconjugative transposon protein2e-2097.4
NC_017179:4023139:403557740355774035798222Clostridium difficile BI1, complete genomeconjugative transposon protein8e-2095.9
NC_013315:4015119:402755740275574027778222Clostridium difficile CD196 chromosome, complete genomeconjugative transposon protein8e-2095.9
NC_013316:4095905:410834341083434108564222Clostridium difficile R20291, complete genomeconjugative transposon protein8e-2095.9
NC_009089:3889811:390649839064983906719222Clostridium difficile 630, complete genomeconjugative transposon conserved hypothetical protein2e-1994
NC_009089:581655:589261589261589482222Clostridium difficile 630, complete genomeconjugative transposon protein3e-1993.6
NC_013895:1332832:136559013655901365811222Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completehypothetical protein3e-1993.6
NC_016630:1247251:126092712609271261148222Filifactor alocis ATCC 35896 chromosome, complete genomehypothetical protein3e-1993.6
NC_004668:2198027:225950922595092259730222Enterococcus faecalis V583, complete genomehypothetical protein2e-1891.3
NC_017347:424500:440685440685440906222Staphylococcus aureus subsp. aureus T0131 chromosome, completeConjugative transposon protein1e-1788.6
NC_002758:434462:451130451130451351222Staphylococcus aureus subsp. aureus Mu50, complete genomehypothetical protein1e-1788.6
NC_017341:428500:444347444347444517171Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,hypothetical protein9e-0855.5