Pre_GI: BLASTP Hits

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Query: NC_009089:428075:440599 Clostridium difficile 630, complete genome

Start: 440599, End: 441510, Length: 912

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009089:3935500:395084539508453951756912Clostridium difficile 630, complete genomeconjugative transposon protein4e-160563
NC_017179:4023139:404413440441344045027894Clostridium difficile BI1, complete genomeconjugative transposon protein3e-147521
NC_013315:4015119:403611440361144037007894Clostridium difficile CD196 chromosome, complete genomeconjugative transposon protein3e-147521
NC_013316:4095905:411690041169004117793894Clostridium difficile R20291, complete genomeconjugative transposon protein3e-147521
NC_017341:428500:432991432991433953963Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,hypothetical protein2e-87322
NC_002758:434462:442161442161443123963Staphylococcus aureus subsp. aureus Mu50, complete genomehypothetical protein2e-87322
NC_017347:424500:429329429329430258930Staphylococcus aureus subsp. aureus T0131 chromosome, completeConjugative transposon protein2e-87322
NC_016630:1247251:125336912533691254283915Filifactor alocis ATCC 35896 chromosome, complete genomehypothetical protein9e-86317
NC_013895:1332832:135795813579581358875918Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completehypothetical protein2e-85315
NC_009089:3889811:389750238975023898410909Clostridium difficile 630, complete genomeconjugative tyransposon conserved hypothetical protein2e-85315
NC_021175:1597613:160323516032351604170936Streptococcus oligofermentans AS 1.3089, complete genometransposase2e-85315
NC_009089:581655:598817598817599749933Clostridium difficile 630, complete genomeputative conjugative transposon exported protein2e-83309
NC_017199:31500:494124941250386975Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28,putative transposase4e-0755.8
NC_014172:100718:1034201034201045351116Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequencehypothetical protein6e-0755.1
NC_017201:93500:1073241073241084301107Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB26,transposase1e-0653.9