Pre_GI: BLASTP Hits

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Query: NC_009089:3935500:3940387 Clostridium difficile 630, complete genome

Start: 3940387, End: 3940626, Length: 240

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009089:428075:430695430695430949255Clostridium difficile 630, complete genomeconjugative transposon conserved hypothetical protein3e-22103
NC_021175:1597613:160808916080891608319231Streptococcus oligofermentans AS 1.3089, complete genomehypothetical protein2e-1167.8
NC_002758:434462:437989437989438219231Staphylococcus aureus subsp. aureus Mu50, complete genomehhypothetical protein5e-1166.2
NC_009089:581655:58476958476960656321795Clostridium difficile 630, complete genome6e-1166.2
NC_009089:581655:603579603579603809231Clostridium difficile 630, complete genomeconjugative transposon protein6e-1166.2
NC_017347:424500:425156425156425386231Staphylococcus aureus subsp. aureus T0131 chromosome, completePolyribonucleotide nucleotidyltransferase4e-1063.5
NC_016630:1247251:124921512492151249445231Filifactor alocis ATCC 35896 chromosome, complete genomehypothetical protein5e-1063.2
NC_009089:3889811:389291438929143893153240Clostridium difficile 630, complete genomecongative transposon conserved hypothetical protein8e-1062.4
NC_009089:1283000:128640512864051286662258Clostridium difficile 630, complete genomeconjugative transposon protein2e-0754.3
NC_015385:2050648:207533220753322075592261Treponema succinifaciens DSM 2489 chromosome, complete genomeconjugative transposon protein4e-0753.5