Pre_GI: BLASTP Hits

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Query: NC_009089:3142976:3164309 Clostridium difficile 630, complete genome

Start: 3164309, End: 3165097, Length: 789

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013316:3056925:307808330780833078871789Clostridium difficile R20291, complete genomehypothetical protein7e-134476
NC_014657:944000:964595964595965347753Caldicellulosiruptor owensensis OL chromosome, complete genomehypothetical protein6e-28124
NC_007576:299266:312955312955313728774Lactobacillus sakei subsp. sakei 23K, complete genomeHypothetical membrane protein3e-25115
NC_008526:250000:264946264946265722777Lactobacillus casei ATCC 334, complete genomehypothetical protein5e-25114
NC_010999:252605:264217264217264993777Lactobacillus casei, complete genomeLabL (Fragment)5e-25114
NC_014334:267409:281786281786282562777Lactobacillus casei str. Zhang chromosome, complete genomehypothetical protein5e-25114
NC_018664:1795223:179937817993781800151774Clostridium acidurici 9a chromosome, complete genomehypothetical protein DUF12122e-24113
NC_008593:1060548:106054810605481061324777Clostridium novyi NT, complete genomemembrane spanning protein1e-23110
NC_021182:2360500:236116023611602361933774Clostridium pasteurianum BC1, complete genomehypothetical protein6e-23108
NC_019978:1477724:149323114932311493974744Halobacteroides halobius DSM 5150, complete genomehypothetical protein2e-2099.8
NC_016641:3217201:323484632348463235601756Paenibacillus terrae HPL-003 chromosome, complete genomehypothetical protein5e-2098.2
NC_013199:282901:295207295207295956750Lactobacillus rhamnosus Lc 705, complete genomeconserved hypothetical protein (membrane protein by homology)7e-2097.8
NC_007350:2019623:203602220360222036783762Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,hypothetical protein1e-1996.7
NC_013171:636293:641478641478642263786Anaerococcus prevotii DSM 20548, complete genomeprotein of unknown function DUF12122e-1892.8
NC_013198:298000:313175313175313924750Lactobacillus rhamnosus GG, complete genomemembrane spanning protein, DNA gyrase, A subunit5e-1891.7
NC_012658:545840:552521552521553279759Clostridium botulinum Ba4 str. 657 chromosome, complete genomehypothetical protein7e-1890.9
NC_010376:1175916:118853811885381189293756Finegoldia magna ATCC 29328, complete genomehypothetical protein3e-1789
NC_014376:869749:871773871773872552780Clostridium saccharolyticum WM1 chromosome, complete genomeprotein of unknown function DUF12128e-1787.4
NC_010337:2950500:2950758295075829520501293Heliobacterium modesticaldum Ice1, complete genomehypothetical protein3e-1479
NC_009614:769851:7743947743947757401347Bacteroides vulgatus ATCC 8482 chromosome, complete genomeintegral membrane protein3e-1272.4
NC_018581:759932:7644927644927659881497Gordonia sp. KTR9 chromosome, complete genomehypothetical protein9e-0960.8
NC_016776:3181706:319965531996553200428774Bacteroides fragilis 638R, complete genomehypothetical protein3e-0858.9
NC_003228:3143470:316216131621613162934774Bacteroides fragilis NCTC 9343, complete genomehypothetical protein3e-0858.9
NC_006347:3082921:310087031008703101643774Bacteroides fragilis YCH46, complete genomeputative integral membrane protein3e-0858.9
NC_013162:1043357:105730910573091058079771Capnocytophaga ochracea DSM 7271, complete genomeprotein of unknown function DUF12124e-0858.9
NC_009142:515828:5175945175945190451452Saccharopolyspora erythraea NRRL 2338, complete genomepossible amino acid export carrier protein3e-0755.8